Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0939 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGCAAGGGCAGGGGCAATTTATGCCCTGCCAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACTGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCGTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCATGAGCCAAACACTGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGTCAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTTTTGGCCTTTAGGTCTCCATGGAACAGCTGCATGA 885 44.97 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMSNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKGFWPLGLHGTAA 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20774523 20778773 + CePI673135_10g009390.1 Cec10g0939 213854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0939 294 FunFam Probable protein phosphatase 2C 39 26 282 - -
Cec10g0939 294 SMART PP2C_SIG_2 45 281 IPR001932 -
Cec10g0939 294 SMART PP2C_4 30 279 IPR001932 -
Cec10g0939 294 PANTHER PROTEIN PHOSPHATASE 34 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec10g0939 294 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Cec10g0939 294 SUPERFAMILY PP2C-like 30 283 IPR036457 -
Cec10g0939 294 CDD PP2Cc 34 281 IPR001932 -
Cec10g0939 294 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cec10g0939 294 Gene3D - 30 284 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0733 Cec-Chr6:8502644 Cec10g0939 Cec-Chr10:20774523 5.90E-20 dispersed
Cec09g0479 Cec-Chr9:4063707 Cec10g0939 Cec-Chr10:20774523 6.80E-34 dispersed
Cec10g0939 Cec-Chr10:20774523 Cec11g1838 Cec-Chr11:32569232 2.00E-85 dispersed
Cec10g0939 Cec-Chr10:20774523 Cec11g1465 Cec-Chr11:28853053 3.20E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0939 K17506 - csv:101214223 547.354