Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0957 ATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCGGCTGAGGCGGTGACGACAGAGGCGATGGCTTTCATTGTAAAGCACGGAACGGGGATTGTTTGTGTGGGGATGAAAGGAGAAGATTTAGAGAGGTTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTCTCTACTGCTTTTACCATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGGTGGCATTGGCATCAAAACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCCCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTCGATCTAGCAGAGCTTGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACGACGACGATGGCTCCATGGCTAGGCTCCCAAAGCTTGGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGAAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAGATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATATTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGTGAAGAGATCTTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGGGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCTAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTACACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGCTAAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTGGAATTCAATGGTGTGTTAAGTGCTCTAATGAATGTCAATAAAAAATAA 1209 44.58 MVVVVDDEDRENEGDLIMAAEAVTTEAMAFIVKHGTGIVCVGMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVVALASKHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDDDDGSMARLPKLGQFAQHHSLKIISIADLIRYRRKREKLIERIGDPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGEEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGGKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNKK 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21440547 21445717 + CePI673135_10g009570.1 Cec10g0957 213872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0957 402 CDD GTP_cyclohydro2 191 384 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cec10g0957 402 Gene3D GTP cyclohydrolase II 193 364 IPR036144 -
Cec10g0957 402 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 1 185 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cec10g0957 402 SUPERFAMILY RibA-like 192 363 IPR036144 -
Cec10g0957 402 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 1 184 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cec10g0957 402 SUPERFAMILY YrdC/RibB 1 192 IPR017945 -
Cec10g0957 402 Hamap GTP cyclohydrolase-2 [ribA]. 190 387 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cec10g0957 402 PIRSF RibA 1 395 - -
Cec10g0957 402 Pfam GTP cyclohydrolase II 199 361 IPR032677 -
Cec10g0957 402 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 1 383 IPR016299 GO:0009231(InterPro)
Cec10g0957 402 PANTHER GTP CYCLOHYDROLASE II-RELATED 1 383 - GO:0008686(PANTHER)|GO:0009231(PANTHER)|GO:0009507(PANTHER)
Cec10g0957 402 FunFam Riboflavin biosynthesis protein RibBA 194 364 - -
Cec10g0957 402 Gene3D DHBP synthase 1 192 - -
Cec10g0957 402 NCBIfam GTP cyclohydrolase II 199 383 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cec10g0957 402 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 1 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0957 K14652 - - csv:101222456 728.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0957 Cec-Chr10:21440547 Cec10g0958 Cec-Chr10:21493684 6.20E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99