Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0980 ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTGAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA 663 38.91 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELEGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22215785 22223131 + CePI673135_10g009800.1 Cec10g0980 213895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0980 220 Coils Coil 149 183 - -
Cec10g0980 220 MobiDBLite consensus disorder prediction 187 220 - -
Cec10g0980 220 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec10g0980 220 Coils Coil 123 143 - -
Cec10g0980 220 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g0980 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec10g0980 220 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 Gene3D - 15 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g0980 220 MobiDBLite consensus disorder prediction 188 212 - -
Cec10g0980 220 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2149 Cec-Chr4:39301063 Cec10g0980 Cec-Chr10:22215785 1.60E-11 dispersed
Cec08g1201 Cec-Chr8:23910284 Cec10g0980 Cec-Chr10:22215785 7.00E-44 dispersed
Cec09g1725 Cec-Chr9:32326637 Cec10g0980 Cec-Chr10:22215785 1.30E-21 dispersed
Cec10g0980 Cec-Chr10:22215785 Cec11g1650 Cec-Chr11:30825720 3.70E-20 dispersed
Cec10g0980 Cec-Chr10:22215785 Cec04g1534 Cec-Chr4:34822053 1.00E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30365 PF01486 K-box 4.30E-16 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0980 - - - 0.0