Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0994 ATGACAATCAGTGGCACCGTCGCCTTTAATATTGATTTTCGGATTTTATCTTCCACTGGTCAAACTCATACTCCATTTCTTTCAAAACCCTTCAATTCTCTCCTCTCCCCCACCTCCATTTCCACCTCAATTCACCCTCCTCTTGCAGCTCGTTGCTCCTCCTCCTCCTCCTCCATCGCTTCTTTTGATATGGATAATGGTGCAGGTCTCAGTTTGTATCCATTACATCGGTGCAAAACAATTCACCTGGTCAGGCATGCACAGGGGATCCACAATGTTGATGGAGATAAGAGTTATAAAGCATATATGCGTCCTGAGTTTTTTGATGCTCACATTACTCAGCTTGGATGGCAGCAGATTGATAATTTGCGTAAGCATGTTCATGAATCTGGTCTTTCCAGGAAGATTGATTTGGTTGTAACATCCCCTTTGCTCAGGACTCTACAAACCGCTGTTGGAGTATTTGGCGGCGAGGGCTATACAGCTGGAATAGACGTGCTGCCCCTAATGATTGCAAATGCAGGCAATAGTGCACGAGCTGCAATCTCAAGTCTAAACTGCCCACCTATTGCGGCTGTTGAGCTTTGTCGTGAACATTTGGGAGTTCATCCTTGTGACAAGAGGAGAAACATCAGTGACTATCAATTCCTCTTTCCGGCAGTTGATTTTTCATTGGCAAAAAGTGATGAGGATGTATTGTGGAAGGCTGACGTTAGAGAGACGAAGGAAGAGCTGGCAGCCAGAGGATTGCAGTTCCTGAATTGGTTGTGGACAAGGAAGGAGAAGGAGATAGCCGTTGTTACACATAGTGGATTTTTATTTCATACCCTAACTGCTTTTGGAAATGACTGCCACCCTTTGGTGAAGAAGGAAATATGCAAACACTTTGCAAATTGTGAGCTTCGATCTATTGTCATAGTTGATAGAAGTATGGTCGGGTCGGATTCCTCAACAACTAATTATCCTGGAAAGGTACCTCCGGGGCTGGATATCCCTAGTGATGCCGTGAATGACAACAACATGAAGGAAGACAAACAACCAGTCGATTCCGAACCAAAGGAACATGAAAATATATGGGTTGAGATCCTGGCCGTCCATGCCAGGTCATTTGGTCAATTCACCGGCACGGGAGGGAGAGTGTACATCGTTGGATTGCTCCGAGGGGCAACGGTCGCGGTACGGAAGAAGGATTCATGGATGGATGATTCTCCGGCTGTGACTCAATCAGCGTCAGATGATGCCTCGTCGATTAATCATCATCGCAGATTATCCAACGGCATCGATTTTAGTCAATACGTGAGCTTCAACGTTTCATCGTGTTCGAGGAAGGAGCTGATCGAGCTGAAAACAAAGTTAATTTCCGAGCTAGAACAGATTCGGCAATTGAAAAGTCGCATCAATTCAGGTGAACTACATTCCAGACCAACACACCAGAAAAAATCGTCAAAAACCTCAGGAACCAAGCGGCCTTTGCCGACGTCGAGCAACGGTATGGAGTTGAAGCGGTCTAATTCAGAAAACGGAAATCTGATGAAGACTTGCTCGCAGATTTTGACAAAACTCATGAAGCACAAACATGGCTGGATCTTCAACAAGCCGGTCGATGTGGTTGGGATGGGCCTTCACGATTACTATGACATCGTCAAGCGTCCAATGGATTTAGGATCCGTGAAAGCCAAGTTGAGCAAAGATGCATATGAATCACCGTTCGATTTTGCTTCCGACGTGAGGTTGACCTTCAAGAACGCGATGACCTACAATCCCAAGGGCCACGATGTGCACGCCATGGCAGAACAATTACTGATAAGATTTGAGGAATTGTTTCGACCTGTGGGTGAACTGCTCGAAGAAGAAGATCGGCGGTTCCGTGGCTACCAGGAAGAGTTGCCAGCGAGTTCATGGAATCACTCAGAGGCTGAAAGAACGGTGAAGAAGGATAATACCCAGAAGCAAATTGTGAAGAAGACAGAGCCAATGAAAGCTCCGTCAAGCTCTTCTAACCCGCCTATGATGCAGTCGCCTGTTAAAACTCCCTCACCTCTACGAGCACCGCCTGTAAAGCCGTTGAAGCAGCCGAAACCAAGAGCCAAAGATCCTAATAAGAGAGAAATGACTCTCGAAGAGAAGCACAAGTTGGGAATTGGTTTGCAGAGTTTGCCACCAGAGAAAATGGAACAAGTAGTGCAAATCATAAAGAAGAGAAATGGTCACTTGAAACAGGATGGGGATGAGATTGAGCTCGACATTGAAGCTGTAGATACAGAAACACTTTGGGAGCTTGATCGATTAGTCACAAACTGGAAGAAGATGATGAGCAAGATCAAACGACAGGCTCTAATCACCGCAGCATCCATCAAACCCAATGGGGTTTTACCTATCCCTGAGAAAATTGAAGTGGGTTCCGAAACGAAAAAGCAACGGAGAGGGGAGGCTGGTGAGGAAGATGTGGACATCGGCGATGAAATGCCTGCAAGCAATTTTCCACCGGTGGAGATCGAGAAAGATGCTGGGGGAGGCCATGCTAGCAGTAGTTCCAGCGGCTCCAGTAGTTCAAGCAGCGATGATTCTTCCTCTTCCAGTGATTCGGATTCCGAAGGCAGTTCTTCTGGGAGCGATTCTGATGACAATGCACAATGA 2637 46.38 MTISGTVAFNIDFRILSSTGQTHTPFLSKPFNSLLSPTSISTSIHPPLAARCSSSSSSIASFDMDNGAGLSLYPLHRCKTIHLVRHAQGIHNVDGDKSYKAYMRPEFFDAHITQLGWQQIDNLRKHVHESGLSRKIDLVVTSPLLRTLQTAVGVFGGEGYTAGIDVLPLMIANAGNSARAAISSLNCPPIAAVELCREHLGVHPCDKRRNISDYQFLFPAVDFSLAKSDEDVLWKADVRETKEELAARGLQFLNWLWTRKEKEIAVVTHSGFLFHTLTAFGNDCHPLVKKEICKHFANCELRSIVIVDRSMVGSDSSTTNYPGKVPPGLDIPSDAVNDNNMKEDKQPVDSEPKEHENIWVEILAVHARSFGQFTGTGGRVYIVGLLRGATVAVRKKDSWMDDSPAVTQSASDDASSINHHRRLSNGIDFSQYVSFNVSSCSRKELIELKTKLISELEQIRQLKSRINSGELHSRPTHQKKSSKTSGTKRPLPTSSNGMELKRSNSENGNLMKTCSQILTKLMKHKHGWIFNKPVDVVGMGLHDYYDIVKRPMDLGSVKAKLSKDAYESPFDFASDVRLTFKNAMTYNPKGHDVHAMAEQLLIRFEELFRPVGELLEEEDRRFRGYQEELPASSWNHSEAERTVKKDNTQKQIVKKTEPMKAPSSSSNPPMMQSPVKTPSPLRAPPVKPLKQPKPRAKDPNKREMTLEEKHKLGIGLQSLPPEKMEQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALITAASIKPNGVLPIPEKIEVGSETKKQRRGEAGEEDVDIGDEMPASNFPPVEIEKDAGGGHASSSSSGSSSSSSDDSSSSSDSDSEGSSSGSDSDDNAQ 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22436011 22446806 + CePI673135_10g009940.1 Cec10g0994 213909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0994 878 FunFam Phosphoglycerate mutase-like protein 1 75 322 - -
Cec10g0994 878 SMART bromo_6 503 613 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 ProSiteProfiles Bromodomain profile. 522 594 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 Coils Coil 442 465 - -
Cec10g0994 878 CDD HP_PGM_like 80 151 IPR013078 -
Cec10g0994 878 MobiDBLite consensus disorder prediction 798 814 - -
Cec10g0994 878 MobiDBLite consensus disorder prediction 658 672 - -
Cec10g0994 878 Gene3D - 697 774 IPR038336 -
Cec10g0994 878 PRINTS Bromodomain signature 557 575 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 PRINTS Bromodomain signature 541 557 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 PRINTS Bromodomain signature 525 538 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 PRINTS Bromodomain signature 575 594 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 SUPERFAMILY Phosphoglycerate mutase-like 79 307 IPR029033 -
Cec10g0994 878 MobiDBLite consensus disorder prediction 316 351 - -
Cec10g0994 878 MobiDBLite consensus disorder prediction 673 690 - -
Cec10g0994 878 CDD Bromo_plant1 510 606 IPR037377 -
Cec10g0994 878 Gene3D - 75 328 IPR029033 -
Cec10g0994 878 Gene3D - 469 627 IPR036427 GO:0005515(InterPro)
Cec10g0994 878 MobiDBLite consensus disorder prediction 337 351 - -
Cec10g0994 878 ProSiteProfiles NET domain profile. 694 775 IPR027353 -
Cec10g0994 878 PANTHER OSJNBA0053K19.4 PROTEIN 358 873 - -
Cec10g0994 878 Pfam Bromodomain 514 598 IPR001487 GO:0005515(InterPro)
Cec10g0994 878 MobiDBLite consensus disorder prediction 485 507 - -
Cec10g0994 878 MobiDBLite consensus disorder prediction 638 653 - -
Cec10g0994 878 MobiDBLite consensus disorder prediction 796 878 - -
Cec10g0994 878 MobiDBLite consensus disorder prediction 839 878 - -
Cec10g0994 878 SUPERFAMILY Bromodomain 510 615 IPR036427 GO:0005515(InterPro)
Cec10g0994 878 MobiDBLite consensus disorder prediction 466 507 - -
Cec10g0994 878 Pfam Bromodomain extra-terminal - transcription regulation 703 765 IPR027353 -
Cec10g0994 878 MobiDBLite consensus disorder prediction 632 702 - -
Cec10g0994 878 SMART PGAM_5 80 276 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0994 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1486 Cec-Chr5:18438481 Cec10g0994 Cec-Chr10:22436011 4.70E-38 dispersed
Cec06g1968 Cec-Chr6:32946020 Cec10g0994 Cec-Chr10:22436011 4.20E-48 dispersed
Cec09g1119 Cec-Chr9:10972129 Cec10g0994 Cec-Chr10:22436011 3.40E-59 dispersed
Cec09g1779 Cec-Chr9:33485262 Cec10g0994 Cec-Chr10:22436011 1.20E-128 dispersed
Cec09g2154 Cec-Chr9:38463830 Cec10g0994 Cec-Chr10:22436011 2.50E-27 dispersed
Cec10g0994 Cec-Chr10:22436011 Cec11g1537 Cec-Chr11:29635990 6.20E-119 dispersed
Cec10g0994 Cec-Chr10:22436011 Cec02g1881 Cec-Chr2:36598208 6.90E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80