Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1000 ATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCCGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGTGCAGTAGCTCAGTTCATCAATTCACCATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCACGACATATGA 525 40.57 MKDEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTCSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPVPGIKLGYVLAICVHDI 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22568604 22575334 - CePI673135_10g010000.1 Cec10g1000 213915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1000 174 Coils Coil 1 28 - -
Cec10g1000 174 ProSiteProfiles K-box domain profile. 15 105 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g1000 174 Coils Coil 92 112 - -
Cec10g1000 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 127 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec10g1000 174 Pfam K-box region 12 99 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1000 K09264 - - csv:101203098 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1000 Cec-Chr10:22568604 Cec11g1531 Cec-Chr11:29576698 3.50E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g838 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00943 Cam10g0965 Cec10g1000 Cco10g0961 Clacu10g0988 Cmu10g1771 Cre10g1145 . . . Cone10ag1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00982 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112