Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1010 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTGTGCACGCTGTGTGGTGCTGAGATTGCCATCATCGTCTTCTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCTTGCGTTGAGGCTCTCATCGAACGCTTTGTGACACGAAACCCTCCACCGAGCTCCGGTACGCTGCAGCTAATCGAAGCCCACCGGAATGCCAATGTTCGAGAACTGAATGCACAACTTACTCAAGTGCTGAACCAGCTTGAAATTGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCATCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 663 50.38 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEIERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPSTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22767397 22768505 - CePI673135_10g010100.1 Cec10g1010 213925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1010 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec10g1010 220 Coils Coil 138 165 - -
Cec10g1010 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 Gene3D - 83 175 - -
Cec10g1010 220 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1010 220 Coils Coil 93 123 - -
Cec10g1010 220 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Cec10g1010 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0713 Cec-Chr3:7720859 Cec10g1010 Cec-Chr10:22767397 5.10E-22 dispersed
Cec06g0857 Cec-Chr6:10793689 Cec10g1010 Cec-Chr10:22767397 6.80E-30 dispersed
Cec10g1010 Cec-Chr10:22767397 Cec04g1534 Cec-Chr4:34822053 8.80E-14 dispersed
Cec10g1010 Cec-Chr10:22767397 Cec04g2149 Cec-Chr4:39301063 9.00E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30366 PF00319 SRF-TF 3.50E-24 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1010 - - - 0.0