Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1028 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCTTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTCAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGACGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTGGGAAAAAAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGATGAAATGTGTATCCTTTCAAAAGCTCAAATCGATCTTGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 984 44.61 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23123587 23129612 + CePI673135_10g010280.1 Cec10g1028 213943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1028 327 Coils Coil 270 307 - -
Cec10g1028 327 CDD SANT_TRF 6 56 - -
Cec10g1028 327 MobiDBLite consensus disorder prediction 92 134 - -
Cec10g1028 327 PANTHER SINGLE MYB HISTONE 4 1 321 IPR044597 GO:0003691(InterPro)
Cec10g1028 327 SUPERFAMILY Winged helix DNA-binding domain 153 224 IPR036390 -
Cec10g1028 327 Gene3D - 2 59 - -
Cec10g1028 327 SMART h15plus2 148 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec10g1028 327 Coils Coil 120 142 - -
Cec10g1028 327 Gene3D - 151 226 IPR036388 -
Cec10g1028 327 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cec10g1028 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cec10g1028 327 SMART sant 4 59 IPR001005 -
Cec10g1028 327 FunFam Telomere repeat-binding factor 1 2 58 - -
Cec10g1028 327 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cec10g1028 327 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cec10g1028 327 Pfam linker histone H1 and H5 family 154 211 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec10g1028 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 218 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec10g1028 327 FunFam Telomere repeat-binding factor 1 8 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1456 Cec-Chr4:34129150 Cec10g1028 Cec-Chr10:23123587 6.00E-45 dispersed
Cec07g0097 Cec-Chr7:1015892 Cec10g1028 Cec-Chr10:23123587 3.20E-06 dispersed
Cec10g1028 Cec-Chr10:23123587 Cec07g1507 Cec-Chr7:30669075 3.00E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30367 PF00538 Linker_histone 1.30E-07 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1028 K09422 - csv:101218411 499.975