Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1052 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCACTATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGATGAAGATAACGGTTCGAATATTCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACAGTGGAAGAAGGTACGATGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCACATTGTTAATCCCAATGGACAGTGCACGAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGCAATCACTTCCAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1083 42.94 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSTMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPAATLVVVNGKSSQPKRRAEDVTVEEGTMDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDHIVNPNGQCTSSFSSEDDCNEPQEINGAITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23522225 23523964 - CePI673135_10g010520.1 Cec10g1052 213967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1052 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 337 IPR036638 GO:0046983(InterPro)
Cec10g1052 360 MobiDBLite consensus disorder prediction 215 276 - -
Cec10g1052 360 Pfam Helix-loop-helix DNA-binding domain 282 322 IPR011598 GO:0046983(InterPro)
Cec10g1052 360 MobiDBLite consensus disorder prediction 164 178 - -
Cec10g1052 360 Gene3D - 274 330 IPR036638 GO:0046983(InterPro)
Cec10g1052 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983(InterPro)
Cec10g1052 360 SMART finulus 278 327 IPR011598 GO:0046983(InterPro)
Cec10g1052 360 MobiDBLite consensus disorder prediction 157 283 - -
Cec10g1052 360 CDD bHLH_AtIND_like 273 335 - -
Cec10g1052 360 FunFam Basic helix-loop-helix transcription factor 273 330 - -
Cec10g1052 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 344 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0856 Cec-Chr3:10525738 Cec10g1052 Cec-Chr10:23522225 2.10E-18 dispersed
Cec05g2274 Cec-Chr5:34104222 Cec10g1052 Cec-Chr10:23522225 5.10E-23 dispersed
Cec08g1704 Cec-Chr8:28208469 Cec10g1052 Cec-Chr10:23522225 7.70E-38 dispersed
Cec09g0037 Cec-Chr9:357015 Cec10g1052 Cec-Chr10:23522225 1.00E-12 dispersed
Cec10g1052 Cec-Chr10:23522225 Cec11g1714 Cec-Chr11:31384503 4.00E-08 dispersed
Cec10g1052 Cec-Chr10:23522225 Cec02g0725 Cec-Chr2:7688845 1.10E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30368 PF00010 HLH 7.60E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1052 - - - 0.0