Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1110 ATGTCATATCTTTCCAATCGCCTGGACGGTATATCATACTCCGAGTCCTCTCCAGTTTCCCACCACTTCCGCACCATACAGCCTTCGAACTCCATAGATTTTCCATCTCTACTGATACTGGACTGCCATACTCCGGTGCCGGATAGATCACCGGGACGCTGCTGCCAACATCTTCCGGAGTTGATTAAAATGGCATCATTTGCTAAAGAAAATGTAGAAAGTGGACAAGCAATTTCTAGTATTATTGGGACGGGAAAATGTGAAAGCTACTTCATTTTTAGTAATGAAACTTCCCTTGGGGATGCATTTTGGATATTCCTATACTTTATGGGCCTTGCATATTGTTTCGTTGGATTATCTGCTATTACTGCTCGATTTTTCCGGTCCATGGAAAATGTTGTGAAGCACTCAAGGAAGGTGGTAGAGATAGATCCGCACACCAATACTGAAATTATTCGATATGAGAAGGTCTGGAACTTTACAATTGCAGATATCAGCTTACTGGCGTTTGGCACTAGCTTTCCTCAAATATCATTAGCTACTATTGATGCTATTCGAAATATTGGCAACCTGTATGCTGGAGGTTTGGGACCTGGAACACTGGTTGGTTCTGCTGCTTTCGACCTTTTTCCCATTCATGCGGTTTGCGTTGTAGTGCCTAAGGCAGGGGAGTTGAAAAAAATATCTGATATAGGAGTTTGGCTAGTTGAGCTCGCTTGGTCTTTCTGGGCTTATATTTGGCTATACATTATTTTGGAGGTGTGGACACCAAATGTAATAACTCTTTGGGAAGCTTTGTTGACTGTGCTACAGTATGGATTACTGCTTACACATGCTTACGCTCAAGATAAGCAATGGCCCTACTTGTCCTTTCCTTTGGCAAGAACTGAGAGGCCAGAGGAATGGGTGCCACCTGAGATTGCTATATGCCCACAGGATAATCCTTGTAGAGAGGAATTTCAAGCCCATGAGAATGAGCAGAGAACCATTGTTGACATTTTCTCTATCCATGATAAAGATGAGAAAGTTCCTGGACATGATGTTGCTGAATCCTCCTGTAGTAATTTCCCAGGGGAGATGGATGGAAAGGCAGACCACCCTCACGTGCTTAAAATTTGGAAACAACAGTTTGTGGATGCACTTTCGTTGAGAACTTCAGAATCAAAGAAGCTGAAAAACATTTATTTACGACTCGCAAGATTATGCTGGCAGTTGCTTCTTTTTCCATGGAGACTTTTGTTTGCTTTTGTACCTCCTTATCACATTGCTCATGGATGGCTTGCCTTTATTTGCTCCCTTATTTTCATCAGTGCGATAGCTTATGTCGTCACTAAGCTCACAGATTTAATAAGCTGTGTCTCAGGAATAAATCCTTATGTCATAGCATTTACAGCATTGGCAAGTGGAACTTCTTGGCCAGATTTAGTGGCTAGTAAGATTGCTGCCGAGCGCCAGACAACGGCAGACTCTGCTATTGCAAACATTACTTGCAGCAATTCAGTGAACATATACGTGGGAATTGGAGTTCCATGGCTGATAAGCACAACATACAATTTCATAGCGTATAGAGAACCACTAAAGATAAAGGATGCAGCAGGTCTGAGCTTCAGTTTGCTGGTGTTTTTTTCAACTTCAGTGGCTTGCATTGCTGTGCTTGTGTTTAGGCGTCTAACATTAGGTGCAGAACTTGGAGGGCCAAGGCTTTGGGCTTGGATTACATGTTTCTTTTTCATGTTGCTTTGGCTCATCTTTGTGGTGCTCTCTTCTCTCAAGGTTTCAGATATCATCTGA 1791 42.55 MSYLSNRLDGISYSESSPVSHHFRTIQPSNSIDFPSLLILDCHTPVPDRSPGRCCQHLPELIKMASFAKENVESGQAISSIIGTGKCESYFIFSNETSLGDAFWIFLYFMGLAYCFVGLSAITARFFRSMENVVKHSRKVVEIDPHTNTEIIRYEKVWNFTIADISLLAFGTSFPQISLATIDAIRNIGNLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKISDIGVWLVELAWSFWAYIWLYIILEVWTPNVITLWEALLTVLQYGLLLTHAYAQDKQWPYLSFPLARTERPEEWVPPEIAICPQDNPCREEFQAHENEQRTIVDIFSIHDKDEKVPGHDVAESSCSNFPGEMDGKADHPHVLKIWKQQFVDALSLRTSESKKLKNIYLRLARLCWQLLLFPWRLLFAFVPPYHIAHGWLAFICSLIFISAIAYVVTKLTDLISCVSGINPYVIAFTALASGTSWPDLVASKIAAERQTTADSAIANITCSNSVNIYVGIGVPWLISTTYNFIAYREPLKIKDAAGLSFSLLVFFSTSVACIAVLVFRRLTLGAELGGPRLWAWITCFFFMLLWLIFVVLSSLKVSDII 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24568595 24576747 + CePI673135_10g011100.1 Cec10g1110 214025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1110 596 Pfam Sodium/calcium exchanger protein 108 279 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g1110 596 Pfam Sodium/calcium exchanger protein 424 588 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g1110 596 PANTHER SODIUM/CALCIUM EXCHANGER 368 595 IPR051171 GO:0015491(PANTHER)|GO:0016020(PANTHER)|GO:0030001(PANTHER)
Cec10g1110 596 Gene3D - 380 590 IPR044880 -
Cec10g1110 596 Gene3D - 161 299 IPR044880 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1110 K03452 - - csv:101205540 976.852
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g312 . . . . . . . . . . . Cma14g00903 . Car14g00825 . . Cpe03g00783 . . . . . . . . . . . . . . . . Cone18ag0721 . . . . . . . . . . . . . . . Cmo14g00932 . . . . . . . . . . . . . Cla10g01048 Cam10g1077 Cec10g1110 Cco10g1077 Clacu10g1093 Cmu10g1872 Cre10g1256 . Csa04g00084 . Cme07g02135
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec04g2033 . 1 406 Antiporters AT5G46110 79.6 7.8e-173 603.6
Cec05g2595 . 51 415 Antiporters AT5G46110 74.0 1.9e-147 519.2
Cec10g0534 . 1 395 Antiporters AT5G54800 73.7 2.4e-160 562.0
Cec05g1631 . 17 395 Antiporters AT5G54800 75.3 3.0e-158 555.1
Cec04g1920 . 1 391 Antiporters AT5G54800 72.0 1.0e-150 530.0
Cec02g0915 . 105 254 Antiporters AT5G54800 76.0 3.5e-58 222.6
Cec09g2027 . 51 394 Antiporters AT3G01550 64.3 2.2e-121 432.6
Cec01g1460 . 104 468 Antiporters AT3G01550 59.5 1.4e-112 403.3
Cec01g1460 . 52 470 Antiporters AT5G33320 71.8 3.3e-155 545.0
Cec09g2027 . 1 397 Antiporters AT5G33320 52.9 2.1e-109 392.9
Cec04g1920 . 46 388 Antiporters AT1G61800 82.3 7.5e-160 560.5
Cec05g1631 . 1 396 Antiporters AT1G61800 72.6 7.5e-160 560.5
Cec10g0534 . 39 396 Antiporters AT1G61800 77.7 1.0e-156 550.1
Cec05g0285 . 106 405 Antiporters AT1G61800 52.6 9.4e-86 314.3
Cec02g0915 . 97 254 Antiporters AT1G61800 73.5 4.2e-62 235.7
Cec05g0285 . 48 417 Antiporters AT5G17630 73.9 1.6e-149 526.2
Cec05g1631 . 81 394 Antiporters AT5G17630 53.9 6.4e-90 328.2
Cec10g0534 . 89 394 Antiporters AT5G17630 54.0 8.4e-90 327.8
Cec04g1920 . 92 389 Antiporters AT5G17630 53.8 2.1e-88 323.2
Cec10g0414 . 266 635 Antiporters AT3G13320 80.3 6.0e-163 570.9
Cec02g1110 . 79 457 Antiporters AT3G13320 76.6 1.1e-156 550.1
Cec07g1539 . 156 525 Antiporters AT3G13320 75.7 1.7e-154 542.7
Cec04g0836 . 5 429 Antiporters AT2G38170 71.6 7.6e-164 573.9
Cec10g2206 . 13 423 Antiporters AT2G38170 63.7 1.0e-139 493.8
Cec03g0075 . 32 381 Antiporters AT2G38170 61.7 1.4e-117 420.2
Cec04g0836 . 1 397 Antiporters AT3G51860 72.4 1.9e-151 532.7
Cec10g2206 . 9 399 Antiporters AT3G51860 65.8 1.3e-136 483.4
Cec03g0075 . 32 370 Antiporters AT3G51860 65.4 1.1e-117 420.6
Cec10g0414 . 266 606 Antiporters AT3G51860 51.6 3.8e-83 305.8
Cec02g1110 . 71 424 Antiporters AT3G51860 50.7 5.0e-83 305.4
Cec07g1539 . 162 493 Antiporters AT3G51860 50.1 1.3e-78 290.8
Cec04g0836 . 34 434 Antiporters AT5G01490 62.7 9.0e-138 487.3
Cec10g2206 . 34 426 Antiporters AT5G01490 62.3 6.6e-133 471.1
Cec03g0075 . 26 381 Antiporters AT5G01490 56.3 3.1e-106 382.5
Cec10g0414 . 265 635 Antiporters AT1G55720 76.3 1.1e-151 533.5
Cec02g1110 . 79 453 Antiporters AT1G55720 73.7 1.5e-145 513.1
Cec07g1539 . 156 522 Antiporters AT1G55720 71.4 1.6e-139 493.0
Cec10g0414 . 265 635 Antiporters AT1G55730 80.9 1.4e-164 576.2
Cec02g1110 . 61 453 Antiporters AT1G55730 74.4 2.0e-158 555.8
Cec07g1539 . 156 526 Antiporters AT1G55730 76.3 7.1e-156 547.4
Cec04g0836 . 65 430 Antiporters AT1G55730 51.6 3.3e-97 352.4
Cec03g1708 . 4 534 Antiporters AT5G27150 77.8 3.6e-234 807.7
Cec06g0546 . 22 527 Antiporters AT5G27150 74.6 6.7e-217 750.4
Cec09g0616 . 90 597 Antiporters AT5G27150 70.1 5.5e-203 704.1
Cec09g2194 . 12 517 Antiporters AT5G27150 60.4 5.8e-168 587.8
Cec06g0546 . 22 536 Antiporters AT3G06370 71.9 1.4e-209 726.1
Cec03g1708 . 5 533 Antiporters AT3G06370 70.6 1.4e-206 716.1
Cec09g0616 . 90 596 Antiporters AT3G06370 66.5 1.8e-185 646.0
Cec09g2194 . 5 517 Antiporters AT3G06370 59.3 4.9e-162 568.2
Cec09g2194 . 1 524 Antiporters AT5G55470 69.3 1.2e-210 729.6
Cec03g1708 . 18 520 Antiporters AT5G55470 60.2 6.1e-170 594.3
Cec06g0546 . 19 514 Antiporters AT5G55470 58.7 2.4e-166 582.4
Cec09g0616 . 76 583 Antiporters AT5G55470 55.4 8.0e-154 540.8
Cec03g1708 . 10 537 Antiporters AT3G05030 78.8 9.2e-238 819.7
Cec06g0546 . 22 527 Antiporters AT3G05030 75.8 2.9e-223 771.5
Cec09g0616 . 90 597 Antiporters AT3G05030 69.8 5.1e-204 707.6
Cec09g2194 . 12 517 Antiporters AT3G05030 59.6 2.6e-168 589.0
Cec07g1406 . 102 667 Antiporters AT1G15460 70.4 7.4e-230 793.5
Cec01g0511 . 1510 2080 Antiporters AT1G15460 68.7 2.1e-224 775.4
Cec08g1349 . 119 663 Antiporters AT1G15460 65.8 9.1e-212 733.4
Cec10g1180 . 102 645 Antiporters AT1G15460 59.2 7.1e-180 627.5
Cec01g1461 . 102 644 Antiporters AT1G15460 57.2 1.1e-175 613.6
Cec10g1180 . 3 709 Antiporters AT3G06450 69.7 2.3e-292 1001.5
Cec01g1461 . 3 683 Antiporters AT3G06450 69.1 4.5e-280 960.7
Cec08g1349 . 23 662 Antiporters AT3G06450 55.9 3.8e-215 745.0
Cec01g0511 . 1416 2063 Antiporters AT3G06450 55.6 5.0e-215 744.6
Cec07g1406 . 6 647 Antiporters AT3G06450 56.1 9.5e-214 740.3
Cec10g1180 . 1 716 Antiporters AT2G47160 79.0 0.0e+00 1151.7
Cec01g1461 . 1 670 Antiporters AT2G47160 74.5 9.8e-304 1039.3
Cec07g1406 . 1 647 Antiporters AT2G47160 56.6 1.0e-215 746.9
Cec08g1349 . 24 666 Antiporters AT2G47160 56.8 8.5e-215 743.8
Cec01g0511 . 1416 2063 Antiporters AT2G47160 56.4 1.0e-212 736.9
Cec07g1406 . 1 667 Antiporters AT1G74810 69.6 1.3e-276 949.1
Cec01g0511 . 1416 2084 Antiporters AT1G74810 68.8 2.3e-270 928.3
Cec08g1349 . 24 661 Antiporters AT1G74810 66.6 2.4e-251 865.1
Cec10g1180 . 7 645 Antiporters AT1G74810 59.8 5.3e-219 757.7
Cec01g1461 . 7 644 Antiporters AT1G74810 58.4 1.1e-216 750.0
Cec10g1180 . 1 708 Antiporters AT3G62270 81.4 0.0e+00 1155.2
Cec01g1461 . 1 694 Antiporters AT3G62270 76.1 5.7e-309 1056.6
Cec08g1349 . 24 694 Antiporters AT3G62270 56.2 9.1e-222 766.9
Cec07g1406 . 1 647 Antiporters AT3G62270 58.0 2.3e-217 752.3
Cec01g0511 . 1416 2063 Antiporters AT3G62270 58.2 1.3e-215 746.5
Cec08g1349 . 24 661 Antiporters AT4G32510 69.2 1.1e-259 892.9
Cec07g1406 . 1 664 Antiporters AT4G32510 65.4 1.4e-256 882.5
Cec01g0511 . 1408 2080 Antiporters AT4G32510 65.0 6.6e-254 873.6
Cec10g1180 . 1 645 Antiporters AT4G32510 55.1 1.4e-206 716.5
Cec01g1461 . 1 650 Antiporters AT4G32510 54.3 1.8e-206 716.1
Cec08g1349 . 24 668 Antiporters AT5G25430 70.1 8.6e-262 899.8
Cec07g1406 . 2 664 Antiporters AT5G25430 65.2 2.3e-246 848.6
Cec01g0511 . 1416 2080 Antiporters AT5G25430 64.2 2.6e-242 835.1
Cec10g1180 . 7 645 Antiporters AT5G25430 56.2 8.7e-206 713.8
Cec01g1461 . 7 656 Antiporters AT5G25430 54.7 4.5e-202 701.4
Cec01g0693 . 1 1023 Antiporters AT2G01980 64.9 0.0e+00 1234.9
Cec01g0693 . 1 621 Antiporters AT1G14660 65.2 2.1e-229 792.3
Cec08g1761 . 18 576 Antiporters AT5G11800 81.0 6.3e-240 827.0
Cec03g1628 . 19 587 Antiporters AT5G11800 75.4 6.3e-224 773.9
Cec05g0904 . 57 563 Antiporters AT5G11800 69.9 2.1e-187 652.5
Cec05g0904 . 31 565 Antiporters AT5G51710 82.6 3.7e-242 834.3
Cec08g1761 . 49 558 Antiporters AT5G51710 70.0 3.1e-188 655.2
Cec03g1628 . 51 560 Antiporters AT5G51710 69.0 1.3e-183 639.8
Cec08g1761 . 42 586 Antiporters AT2G19600 80.1 4.0e-231 797.7
Cec03g1628 . 39 584 Antiporters AT2G19600 80.7 3.8e-229 791.2
Cec05g0904 . 32 563 Antiporters AT2G19600 67.3 4.5e-182 634.8
Cec05g1199 . 148 563 Antiporters AT1G49810 76.6 1.4e-177 619.4
Cec05g1199 . 1 581 Antiporters AT3G19490 76.3 5.7e-246 847.0
Cec02g2434 . 99 569 Antiporters AT5G12860 91.3 4.8e-250 860.5
Cec10g0956 . 1 493 Antiporters AT5G64280 67.0 3.7e-194 674.9
Cec10g0956 . 22 493 Antiporters AT5G64290 80.1 6.2e-213 737.3
Cec07g0287 . 3 379 Antiporters AT4G28390 81.5 5.9e-175 610.5
Cec08g1661 . 458 844 Antiporters AT4G28390 73.5 3.2e-157 551.6
Cec01g1702 . 5 307 Antiporters AT4G28390 63.2 4.3e-109 391.7
Cec08g1661 . 456 845 Antiporters AT3G08580 78.1 8.2e-169 590.1
Cec07g0287 . 1 378 Antiporters AT3G08580 72.5 1.0e-150 530.0
Cec01g1702 . 7 307 Antiporters AT3G08580 57.6 4.9e-97 351.7
Cec08g1661 . 456 845 Antiporters AT5G13490 81.9 2.8e-180 628.2
Cec07g0287 . 8 378 Antiporters AT5G13490 79.8 6.8e-163 570.5
Cec01g1702 . 8 307 Antiporters AT5G13490 61.5 5.9e-106 381.3
Cec01g1702 . 4 301 Antiporters AT5G17400 80.2 2.1e-138 488.8
Cec07g0287 . 79 365 Antiporters AT5G17400 64.5 1.2e-109 393.3
Cec08g1661 . 545 836 Antiporters AT5G17400 63.0 5.0e-108 387.9
Cec03g1747 . 4 543 Antiporters AT1G08960 65.9 4.0e-185 644.8
Cec10g1606 . 90 614 Antiporters AT5G17850 52.4 1.3e-149 526.9
Cec10g1110 . 64 596 Antiporters AT2G47600 71.4 5.3e-214 740.7
Cec07g1425 . 1 300 Antiporters AT1G79900 68.1 6.3e-116 414.1
Cec09g0212 . 88 388 Antiporters AT1G79900 67.2 4.2e-112 401.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010649 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32