Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1195 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGGCAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCTGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCCGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGGTATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCAGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA 1233 44.93 MAAAATTSVVPPNRRRTVNAPEGKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26037240 26041358 - CePI673135_10g011950.1 Cec10g1195 214110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1195 410 Gene3D - 27 245 IPR027417 -
Cec10g1195 410 FunFam Eukaryotic initiation factor 4A-III 22 241 - -
Cec10g1195 410 SMART ultradead3 56 253 IPR014001 -
Cec10g1195 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Cec10g1195 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Cec10g1195 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cec10g1195 410 SMART helicmild6 290 371 IPR001650 -
Cec10g1195 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Cec10g1195 410 Gene3D - 246 410 IPR027417 -
Cec10g1195 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Cec10g1195 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Cec10g1195 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec10g1195 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cec10g1195 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cec10g1195 410 CDD SF2_C_DEAD 250 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0193 Cec-Chr5:1608330 Cec10g1195 Cec-Chr10:26037240 2.40E-75 dispersed
Cec07g1507 Cec-Chr7:30669075 Cec10g1195 Cec-Chr10:26037240 9.90E-141 dispersed
Cec10g1195 Cec-Chr10:26037240 Cec10g1415 Cec-Chr10:28494553 7.00E-57 dispersed
Cec10g1195 Cec-Chr10:26037240 Cec09g0077 Cec-Chr9:628920 1.20E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1195 K13025 - csv:101222664 800.816