Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1221 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGTTTCTTCCTCCCCAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGACACTGATGAGACGAACCGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCACATTAGGTGACTCTGAAACCATTGAAACAGAGAGAGTTAGAAATCCTCATGTAGGAGATTAG 843 43.65 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEFLPPQKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEDTDETNRDNQFHLHLQKLQIFTLGDSETIETERVRNPHVGD 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26338971 26343073 + CePI673135_10g012210.1 Cec10g1221 214136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1221 280 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 Gene3D - 14 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec10g1221 280 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Cec10g1221 280 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 Pfam K-box region 91 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g1221 280 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g1221 280 Coils Coil 154 174 - -
Cec10g1221 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec10g1221 280 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec10g1221 280 Coils Coil 128 148 - -
Cec10g1221 280 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0469 Cec-Chr4:19347343 Cec10g1221 Cec-Chr10:26338971 1.30E-35 dispersed
Cec10g1221 Cec-Chr10:26338971 Cec04g1534 Cec-Chr4:34822053 4.50E-23 dispersed
Cec10g1221 Cec-Chr10:26338971 Cec06g0024 Cec-Chr6:275717 8.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30377 PF01486 K-box 1.90E-17 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1221 - - - 0.0