Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec10g1221 | ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGTTTCTTCCTCCCCAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGACACTGATGAGACGAACCGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCACATTAGGTGACTCTGAAACCATTGAAACAGAGAGAGTTAGAAATCCTCATGTAGGAGATTAG | 843 | 43.65 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEFLPPQKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEDTDETNRDNQFHLHLQKLQIFTLGDSETIETERVRNPHVGD | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26338971 | 26343073 | + | CePI673135_10g012210.1 | Cec10g1221 | 214136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec10g1221 | 280 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | Gene3D | - | 14 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec10g1221 | 280 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - | |
Cec10g1221 | 280 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | Pfam | K-box region | 91 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec10g1221 | 280 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec10g1221 | 280 | Coils | Coil | 154 | 174 | - | - | |
Cec10g1221 | 280 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 213 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec10g1221 | 280 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | SUPERFAMILY | SRF-like | 2 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec10g1221 | 280 | Coils | Coil | 128 | 148 | - | - | |
Cec10g1221 | 280 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g0469 | Cec-Chr4:19347343 | Cec10g1221 | Cec-Chr10:26338971 | 1.30E-35 | dispersed | |
Cec10g1221 | Cec-Chr10:26338971 | Cec04g1534 | Cec-Chr4:34822053 | 4.50E-23 | dispersed | |
Cec10g1221 | Cec-Chr10:26338971 | Cec06g0024 | Cec-Chr6:275717 | 8.00E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30377 | PF01486 | K-box | 1.90E-17 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec10g1221 | - | - | - | 0.0 |