Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1276 ATGGAGTTGGGTTTGAGATTAGGAAATGATCCGCCATTTGTATTCCCTCAAAAACCTCCTTCGTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCATGAACATCAAACCCACAATCACAATCACAAACACCATAACCACCTCCTTCCCCATTCTTTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGCCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGAATGGCGAGGGAGGAGAATTCGGAAGAGGCAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAGGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCAAGACAGCAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACGGAAGTAGAGTGCGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCTCAACTTCCGTTGA 828 44.69 MELGLRLGNDPPFVFPQKPPSSSSSSHPTPLDFSLSFSSILQPPHEHQTHNHNHKHHNHLLPHSFNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAANGEGGEFGRGNGIVLSTYRNRNEREEKRENEEEEEDEEEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATLNFR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26893655 26896804 - CePI673135_10g012760.1 Cec10g1276 214191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1276 275 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec10g1276 275 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677(InterPro)
Cec10g1276 275 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1276 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 269 IPR050762 -
Cec10g1276 275 SMART HOX_1 153 215 IPR001356 GO:0003677(InterPro)
Cec10g1276 275 MobiDBLite consensus disorder prediction 70 86 - -
Cec10g1276 275 MobiDBLite consensus disorder prediction 19 46 - -
Cec10g1276 275 Coils Coil 116 152 - -
Cec10g1276 275 Gene3D - 159 209 - -
Cec10g1276 275 CDD homeodomain 155 212 IPR001356 GO:0003677(InterPro)
Cec10g1276 275 MobiDBLite consensus disorder prediction 1 86 - -
Cec10g1276 275 SUPERFAMILY Homeodomain-like 153 220 IPR009057 -
Cec10g1276 275 Pfam Homeodomain 155 209 IPR001356 GO:0003677(InterPro)
Cec10g1276 275 Coils Coil 224 244 - -
Cec10g1276 275 MobiDBLite consensus disorder prediction 122 150 - -
Cec10g1276 275 MobiDBLite consensus disorder prediction 130 148 - -
Cec10g1276 275 SMART halz 211 254 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1276 Cec-Chr10:26893655 Cec10g1777 Cec-Chr10:32503119 7.80E-44 dispersed
Cec10g1276 Cec-Chr10:26893655 Cec09g0378 Cec-Chr9:3241315 1.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30381 PF00046 Homeodomain 1.00E-13 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1276 K09338 - csv:101208907 285.034