Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1303 ATGGCTGCTTTCTCCTCTTGGTTGCTGGATTCTGTTGACACTTCTTTAGATCTCAATACTCAACCTCTCAGATTCTCCGGTGAAGCTCCGAAGGAGAGGAATTATATGGATCTTGAGAGGAAGGTTTCTGTGAAAGAAGAGACTGGAGCTTTAATGGAGGAATTGAAGAGAGTAAGTGCAGAGAACAAGAAATTGACTGAAATGTTGACTATTGTGTGTGAAAATTACAACAATTTGAGAGGGCATTTGATGGAACAAATGAACAAAAATGGAGAAAAGGAGATTTCTTCTTCAAAGAAGAGGAAGTCAGAGAGCAGCAATAACAATATCAATATGGCTGGAATGAATGGAAATTCAGAGAGTAGTTCAACTGATGAAGAGTCTTACAAGAAACCAAAAGAAGAAACCATTAACAAATCTGCTAAAATCACTAGAGTTCAAGTCAAAATTGGAGCTTCAGATTCAAATCTAGTTGTTAAAGATGGATTTCAATGGAGGAAATATGGCCAAAAGGTCACTAGAGATAATCCTTGTCCTAGAGCTTACTTCAAATGCTCTTTTGCTCCTAGTTGTCCTGTTAAAAAGAAGGTTCAAAGAAGTGTAGAAGATCAATCAGTTCTTGTAGCCACATACGAAGGCGAACACAATCATCCACACCCATCTCAGATTGAGCCCACTTCCGGTGGCGCCGCCGCCCGTAGCGTCAGCATAGCTCCGGCGGTGCTCACAGCAGCGCCGGGATCCTCGTCGGCGCCGGCGATTTCACTCGACTTGGCGAAGCCGAAGCCGACCATGGAAGCTAAAACGACCTCCAACCCAAGATTTGACTCGCCGGAACTGCAACAGTTTCTCGTCGAACAGATGGCCTCTTCCTTAACGAAAGATCCCAATTTCACGGCGGCGCTTGCGGCGGCGATTTCGGGAAAGATTTTCCCACATTGA 942 44.27 MAAFSSWLLDSVDTSLDLNTQPLRFSGEAPKERNYMDLERKVSVKEETGALMEELKRVSAENKKLTEMLTIVCENYNNLRGHLMEQMNKNGEKEISSSKKRKSESSNNNINMAGMNGNSESSSTDEESYKKPKEETINKSAKITRVQVKIGASDSNLVVKDGFQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPHPSQIEPTSGGAAARSVSIAPAVLTAAPGSSSAPAISLDLAKPKPTMEAKTTSNPRFDSPELQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27232583 27233970 - CePI673135_10g013030.1 Cec10g1303 214218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1303 313 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1303 313 MobiDBLite consensus disorder prediction 90 135 - -
Cec10g1303 313 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1303 313 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1303 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 307 IPR044810 GO:0003700(InterPro)
Cec10g1303 313 MobiDBLite consensus disorder prediction 102 123 - -
Cec10g1303 313 FunFam WRKY transcription factor 40 144 221 - -
Cec10g1303 313 SMART WRKY_cls 159 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1303 313 Gene3D WRKY domain 143 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1303 313 MobiDBLite consensus disorder prediction 245 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1808 Cec-Chr5:29930906 Cec10g1303 Cec-Chr10:27232583 9.90E-46 dispersed
Cec06g1830 Cec-Chr6:31720774 Cec10g1303 Cec-Chr10:27232583 1.20E-22 dispersed
Cec10g1303 Cec-Chr10:27232583 Cec10g2071 Cec-Chr10:35430145 2.30E-15 dispersed
Cec10g1303 Cec-Chr10:27232583 Cec08g1412 Cec-Chr8:25971164 9.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30383 PF03106 WRKY 6.00E-23 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1303 - - - 0.0