Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1313 ATGGCTGGAGAAACTCCCGATGGCCACTCCTCCGGCAATCCGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGATGAAGCGGCGGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAACTTCTTGGATGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGCGATGCTCAGTTGACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGACGATGTGCCCATGACAGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCGCTTAGAGAACATGTTACCATGGATGCAGTTAGACGCTTTATAGGGAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTATATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCTGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTACGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATCGGGGGCGTTGTGACCCGGCGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTGTTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCGGCTGTAGGACTAACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAATGGACCCTTGAAGGAGGTGCCCTTGTATTGGCTGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAACAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCAGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCCCAAAATGTTGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCACAGCCGAAGGGAGCCAATCTTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAAGGCCACTGGATCCGGAGCTGCTCCCCCAAGATCTGCTGAGGAAGTACATAACTTACTCTAAGTTAAATGTTTTCCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGACGTTGATATGGCAATTCGCGTGTTACTTGATTCTTTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTGCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTACCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGATCACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTTCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA 2838 43.55 MAGETPDGHSSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQLTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSINESQEDSQDSARPLDPELLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR 945
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 27372882 27378765 + CePI673135_10g013130.1 Cec10g1313 214228

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1313 945 Pfam MCM P-loop domain 496 718 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 CDD MCM2 511 838 - -
Cec10g1313 945 SMART mcm 325 840 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 Gene3D - 329 454 IPR012340 -
Cec10g1313 945 FunFam DNA helicase 221 325 - -
Cec10g1313 945 MobiDBLite consensus disorder prediction 1 83 - -
Cec10g1313 945 FunFam DNA helicase 488 862 - -
Cec10g1313 945 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 220 905 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER)
Cec10g1313 945 MobiDBLite consensus disorder prediction 116 210 - -
Cec10g1313 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 842 IPR027417 -
Cec10g1313 945 Pfam MCM AAA-lid domain 755 839 IPR041562 -
Cec10g1313 945 Gene3D - 356 406 - -
Cec10g1313 945 Pfam MCM N-terminal domain 229 322 IPR027925 -
Cec10g1313 945 Gene3D - 221 325 - -
Cec10g1313 945 MobiDBLite consensus disorder prediction 9 43 - -
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 688 696 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 Gene3D - 488 862 IPR027417 -
Cec10g1313 945 MobiDBLite consensus disorder prediction 731 745 - -
Cec10g1313 945 MobiDBLite consensus disorder prediction 57 72 - -
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 MobiDBLite consensus disorder prediction 116 159 - -
Cec10g1313 945 Pfam Mini-chromosome maintenance protein 2 45 168 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cec10g1313 945 ProSiteProfiles MCM family domain profile. 508 714 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cec10g1313 945 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cec10g1313 945 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Cec10g1313 945 MobiDBLite consensus disorder prediction 723 748 - -
Cec10g1313 945 Pfam MCM OB domain 328 455 IPR033762 -
Cec10g1313 945 MobiDBLite consensus disorder prediction 176 191 - -
Cec10g1313 945 FunFam DNA helicase 356 406 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1313 K02540 - - csv:101219546 1759.19
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0509 Cec-Chr9:4363735 Cec10g1313 Cec-Chr10:27372882 4.70E-88 dispersed
Cec09g1700 Cec-Chr9:31578651 Cec10g1313 Cec-Chr10:27372882 1.70E-56 dispersed
Cec10g1313 Cec-Chr10:27372882 Cec11g0370 Cec-Chr11:3884967 2.00E-91 dispersed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0257 . 105 657 Core DNA Replication Machinery Family AT4G14700 65.9 2.0e-212 736.1
Cec08g0257 . 105 660 Core DNA Replication Machinery Family AT4G12620 67.7 9.8e-220 760.4
Cec08g1624 . 65 425 Core DNA Replication Machinery Family AT2G37560 64.8 5.6e-140 494.2
Cec07g0530 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 1.5e-150 529.6
Cec06g0376 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cec11g0910 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 6.5e-94 340.9
Cec09g2365 . 68 863 Core DNA Replication Machinery Family AT1G79150 58.8 1.0e-243 840.1
Cec10g1313 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1352.8
Cec04g2153 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cec02g0506 . 192 1036 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1147.5
Cec11g0370 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1111.7
Cec04g2312 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1173.3
Cec09g0509 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1220.3
Cec02g2065 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.4 6.7e-158 554.3
Cec02g2065 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 1.5e-143 506.5
Cec09g0868 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cec10g2063 . 12 783 Core DNA Replication Machinery Family AT3G09660 73.8 0.0e+00 1109.4
Cec09g1700 . 22 420 Core DNA Replication Machinery Family AT2G14050 85.2 4.6e-196 681.4
Cec09g1698 . 9 242 Core DNA Replication Machinery Family AT2G14050 67.9 1.7e-86 317.4
Cec02g1251 . 1926 2304 Core DNA Replication Machinery Family AT2G20980 56.2 6.5e-108 387.9
Cec09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Cec05g0169 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.1e-49 193.4
Cec02g1303 . 9 1536 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1744.6
Cec01g1709 . 118 740 Core DNA Replication Machinery Family AT1G67630 60.5 2.1e-214 742.3
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec08g0101 . 196 639 Core DNA Replication Machinery Family AT5G41880 65.0 2.2e-176 615.5
Cec04g1199 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cec10g1767 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.3e-205 712.6
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec01g0547 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 4.9e-38 154.1
Cec02g2314 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2988.0
Cec09g2157 . 83 2096 Core DNA Replication Machinery Family AT1G08260 68.2 0.0e+00 2788.4
Cec02g2314 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2955.6
Cec09g2157 . 106 2203 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2751.1
Cec01g1812 . 681 1116 Core DNA Replication Machinery Family AT5G22110 71.1 3.1e-184 641.7
Cec02g2368 . 74 998 Core DNA Replication Machinery Family AT5G22010 63.2 7.7e-306 1046.6
Cec10g0359 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cec04g0586 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 4.1e-178 620.9
Cec11g1645 . 63 381 Core DNA Replication Machinery Family AT1G21690 81.6 1.6e-144 509.2
Cec08g0611 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 1.3e-155 546.2
Cec11g0165 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.7 3.0e-245 844.7
Cec10g0110 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 3.4e-196 681.8
Cec06g1758 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 1.8e-247 852.0
Cec10g0110 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.3 5.1e-227 784.6
Cec06g1758 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.6 1.5e-239 825.9
Cec10g0110 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.4 1.5e-225 779.6
Cec03g1851 . 1 568 Core DNA Replication Machinery Family AT5G26680 58.5 5.8e-168 587.4
Cec05g0315 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 3.3e-300 1028.1
Cec07g1686 . 1 282 Core DNA Replication Machinery Family AT2G25100 66.7 7.7e-108 387.1
Cec02g2268 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 8.7e-298 1019.6
Cec02g2268 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 3.3e-242 834.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35