Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1330 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGATCATCAAATTGCTAACCCTTGGATCTATAAACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTCTTCACGCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTTGGTCGAGTTTACCGTGGCACCTTACGATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATCTGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTAGTCGTACAGGTACGACATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTGTAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCCATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGCGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAACTCGCAAGGCCTAA 1083 43.4 MMAFSFVSAWNKRRRQKKSSQLDHQIANPWIYKPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYLHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVVDPEMSRSSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQTRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27591339 27596399 + CePI673135_10g013300.1 Cec10g1330 214245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1330 360 PANTHER OS01G0750732 PROTEIN 12 351 IPR050885 -
Cec10g1330 360 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Cec10g1330 360 FunFam receptor-like serine/threonine-protein kinase NCRK 149 359 - -
Cec10g1330 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1330 360 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Cec10g1330 360 CDD STKc_IRAK 76 348 - -
Cec10g1330 360 Gene3D Phosphorylase Kinase; domain 1 35 148 - -
Cec10g1330 360 PIRSF ILK 40 359 - -
Cec10g1330 360 FunFam serine/threonine-protein kinase PBS1-like 38 148 - -
Cec10g1330 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cec10g1330 360 Pfam Protein kinase domain 73 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1330 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1330 Cec-Chr10:27591339 Cec11g1916 Cec-Chr11:33394559 6.50E-75 dispersed
Cec10g1330 Cec-Chr10:27591339 Cec10g1331 Cec-Chr10:27598337 3.00E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72323 PF00069 Pkinase 5.20E-50 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1330 - - - 0.0