Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec10g1365 | ATGGATGTCGATGGAGGCGGTAAGCGCGTTTTTCAGAGGCTGGGCGCGCCTTCCGGAGATTCTAGGAATCAGAAGGTCTGTTACCATTGGAGGGCGGGTAAATGTAATCGCTATCCATGTCCTTTCCTTCACCGTGAGTTAAATGCCCCTCCACATGCGGCTTCGAATGGAGCTGTTAATACTGCCTCGAAGAGGGGTCATGGATTCGCCTCTGATGATTCGACTGTTTCTGTTCCCCGACGGAGTCCCAATTTTAGCGGCGGCTCGACGTGGGGACGAGTTCATGGTGGTGGTAATAGAATAATTAGAAAGACAGAGAAGCTTTGTAATTTTTGGGTTCAGGGGAACTGTGGTTATGGGGATAAGTGTAGATACTTACATTCTTGGAGTTTGGGGGAAAGTTTTTCGCATCTAACGCAGCTTGATGGGCATCAGAAGGTTGTAACTGGGATCGCTTTTCCATCTGGTTCTGATAAGCTTTATACTGGTAGTAAAGATGAGACCGTCAGGGTCTGGGACTGCCAGTCCGGGCAGTGCATGGCTGTTATTAATCTTGGCGGAGAAGTTGGTTCCATGATTGCTGAAGGCCCTTGGGTATTTGTTGGCATACCTAATTTCGTTAAGGCATGGAACATTCAGACCTCAGCTGATCTGACTCTTAGCGGACCCGTTGGCCTAGTTTATGCCCTTGTTGTGGGCAATGATTTACTCTTTGCTGGTACACAGGATGGATCCATATTGGCATGGAGATTTAATGCGGCAACCAACTGCTTTGAGCCAGCTGCATCACTCAACGGCCACACCCTTCCTGTTGTTTCATTAGTTGTCGGAGCTAATAGGCTCTACTCTGGTTCCATGGACCATTCTATTAAAGTATGGAGTCTGGAATCTTTACAATGTCTACAGACACTGACAGATCATACATCAGTTGTAATGTCTGTACTTTGCTGGGAGCAATTCCTTTTGTCGTGTTCACTAGATAAGACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTGGAAGTAACTTACACGCAAAAAGAAGATCATGGCCTGCTTACTCTCTGTGGGATGCATGATCAAGATGGGAAGCCTATTTTGTTATGTTCGTGCAATGACAACTCTGTTCGCCTTTATGATTTGCCATCGTTCTCTGAGAGGGGTAAAATATATTCCAAGGAAGAAATTAGATCGATCCAAGCTGGTCCAGGCGGCATCTTCTTTACCGGTGATGGGACTGGACAAGTGAAAGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATCTGGTAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGAGTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCCGTCCCTCTGGCTGAAAGGATACTGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTACGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCTCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCCAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACCCAATCCCCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAGCACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTTCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCATACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTACTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAAATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAGAGGCTGCAGAGTAAGGGAATCAGGTGCTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAAGGTGAATTCATTGAAACAGAGAGTCTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG | 3921 | 44.27 | MDVDGGGKRVFQRLGAPSGDSRNQKVCYHWRAGKCNRYPCPFLHRELNAPPHAASNGAVNTASKRGHGFASDDSTVSVPRRSPNFSGGSTWGRVHGGGNRIIRKTEKLCNFWVQGNCGYGDKCRYLHSWSLGESFSHLTQLDGHQKVVTGIAFPSGSDKLYTGSKDETVRVWDCQSGQCMAVINLGGEVGSMIAEGPWVFVGIPNFVKAWNIQTSADLTLSGPVGLVYALVVGNDLLFAGTQDGSILAWRFNAATNCFEPAASLNGHTLPVVSLVVGANRLYSGSMDHSIKVWSLESLQCLQTLTDHTSVVMSVLCWEQFLLSCSLDKTIKVWAATESGNLEVTYTQKEDHGLLTLCGMHDQDGKPILLCSCNDNSVRLYDLPSFSERGKIYSKEEIRSIQAGPGGIFFTGDGTGQVKDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLVNRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMSEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLPSLWLKGYCSLIVDWEDSMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITQSFLNPCAHQSHIQSFWRVFPLGVLYSTQSPKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL | 1306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27908105 | 27937411 | - | CePI673135_10g013650.1 | Cec10g1365 | 214280 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec10g1365 | 1306 | CDD | SynN | 448 | 605 | IPR006011 | GO:0016020(InterPro) | |
Cec10g1365 | 1306 | SUPERFAMILY | CCCH zinc finger | 104 | 128 | IPR036855 | GO:0046872(InterPro) | |
Cec10g1365 | 1306 | MobiDBLite | consensus disorder prediction | 56 | 90 | - | - | |
Cec10g1365 | 1306 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 264 | 297 | - | - | |
Cec10g1365 | 1306 | PRINTS | G protein beta WD-40 repeat signature | 281 | 295 | IPR020472 | - | |
Cec10g1365 | 1306 | PRINTS | G protein beta WD-40 repeat signature | 321 | 335 | IPR020472 | - | |
Cec10g1365 | 1306 | PRINTS | G protein beta WD-40 repeat signature | 160 | 174 | IPR020472 | - | |
Cec10g1365 | 1306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 624 | 663 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cec10g1365 | 1306 | Pfam | WD domain, G-beta repeat | 299 | 333 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | Pfam | WD domain, G-beta repeat | 259 | 294 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | Pfam | WD domain, G-beta repeat | 137 | 173 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | Coils | Coil | 448 | 482 | - | - | |
Cec10g1365 | 1306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 21 | 47 | IPR000571 | GO:0046872(InterPro) | |
Cec10g1365 | 1306 | FunFam | Syntaxin 132 | 611 | 711 | - | - | |
Cec10g1365 | 1306 | SMART | c3hfinal6 | 21 | 46 | IPR000571 | GO:0046872(InterPro) | |
Cec10g1365 | 1306 | SMART | c3hfinal6 | 105 | 129 | IPR000571 | GO:0046872(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1103 | 1135 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1207 | 1238 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 995 | 1026 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1140 | 1170 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1175 | 1206 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1031 | 1062 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 959 | 990 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 1067 | 1098 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SMART | mt_12 | 923 | 954 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | Gene3D | - | 117 | 218 | IPR015943 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | Gene3D | - | 448 | 576 | - | - | |
Cec10g1365 | 1306 | Coils | Coil | 621 | 641 | - | - | |
Cec10g1365 | 1306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 103 | 130 | IPR000571 | GO:0046872(InterPro) | |
Cec10g1365 | 1306 | Pfam | Syntaxin | 450 | 653 | IPR006011 | GO:0016020(InterPro) | |
Cec10g1365 | 1306 | Gene3D | - | 229 | 433 | IPR015943 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 264 | 303 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 141 | 173 | - | - | |
Cec10g1365 | 1306 | FunFam | Transcription termination factor MTERF4, chloroplastic | 1047 | 1261 | - | - | |
Cec10g1365 | 1306 | SMART | SynN_4 | 443 | 569 | IPR006011 | GO:0016020(InterPro) | |
Cec10g1365 | 1306 | CDD | SNARE_syntaxin1-like | 617 | 679 | - | - | |
Cec10g1365 | 1306 | PANTHER | - | 21 | 418 | - | - | |
Cec10g1365 | 1306 | FunFam | Syntaxin 132 | 443 | 572 | - | - | |
Cec10g1365 | 1306 | Gene3D | - | 610 | 711 | - | - | |
Cec10g1365 | 1306 | Pfam | CCCH-type zinc finger | 107 | 127 | IPR041367 | - | |
Cec10g1365 | 1306 | CDD | WD40 | 137 | 414 | - | - | |
Cec10g1365 | 1306 | Gene3D | Transcription termination factor 3, mitochondrial | 1048 | 1262 | IPR038538 | - | |
Cec10g1365 | 1306 | Gene3D | Transcription termination factor 3, mitochondrial | 909 | 1047 | IPR038538 | - | |
Cec10g1365 | 1306 | SUPERFAMILY | WD40 repeat-like | 127 | 418 | IPR036322 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 141 | 182 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | FunFam | Zinc finger CCCH domain-containing protein 48 | 129 | 219 | - | - | |
Cec10g1365 | 1306 | SMART | WD40_4 | 340 | 381 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | SMART | WD40_4 | 213 | 250 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | SMART | WD40_4 | 257 | 294 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | SMART | WD40_4 | 134 | 173 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | SMART | WD40_4 | 297 | 334 | IPR001680 | GO:0005515(InterPro) | |
Cec10g1365 | 1306 | FunFam | Zinc finger CCCH domain-containing protein 48 | 221 | 423 | - | - | |
Cec10g1365 | 1306 | Coils | Coil | 547 | 567 | - | - | |
Cec10g1365 | 1306 | MobiDBLite | consensus disorder prediction | 56 | 89 | - | - | |
Cec10g1365 | 1306 | Pfam | SNARE domain | 654 | 706 | IPR000727 | - | |
Cec10g1365 | 1306 | SMART | tSNARE_6 | 613 | 680 | IPR000727 | - | |
Cec10g1365 | 1306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 618 | 680 | IPR000727 | - | |
Cec10g1365 | 1306 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cec10g1365 | 1306 | FunFam | Transcription termination factor mterf4, chloroplastic | 909 | 1046 | - | - | |
Cec10g1365 | 1306 | Pfam | mTERF | 945 | 1253 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Cec10g1365 | 1306 | SUPERFAMILY | t-snare proteins | 448 | 673 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g0541 | Cec-Chr2:5186130 | Cec10g1365 | Cec-Chr10:27908105 | 1.60E-14 | dispersed | |
Cec02g0885 | Cec-Chr2:11094018 | Cec10g1365 | Cec-Chr10:27908105 | 2.20E-50 | dispersed | |
Cec02g0887 | Cec-Chr2:11139652 | Cec10g1365 | Cec-Chr10:27908105 | 9.30E-74 | dispersed | |
Cec02g2543 | Cec-Chr2:42473963 | Cec10g1365 | Cec-Chr10:27908105 | 3.50E-07 | dispersed | |
Cec03g0052 | Cec-Chr3:531947 | Cec10g1365 | Cec-Chr10:27908105 | 1.40E-08 | dispersed | |
Cec04g1184 | Cec-Chr4:31436433 | Cec10g1365 | Cec-Chr10:27908105 | 5.90E-11 | dispersed | |
Cec04g1660 | Cec-Chr4:35814281 | Cec10g1365 | Cec-Chr10:27908105 | 2.30E-34 | dispersed | |
Cec09g2305 | Cec-Chr9:39920781 | Cec10g1365 | Cec-Chr10:27908105 | 5.80E-48 | dispersed | |
Cec10g1365 | Cec-Chr10:27908105 | Cec10g1837 | Cec-Chr10:33175462 | 7.20E-63 | dispersed | |
Cec10g1365 | Cec-Chr10:27908105 | Cec04g1193 | Cec-Chr4:31507906 | 5.70E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30386 | PF02536 | mTERF | 1.80E-104 | No_clan | Cec | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec10g1365 | K15031 | - | csv:101203314 | 968.378 |