Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1365 ATGGATGTCGATGGAGGCGGTAAGCGCGTTTTTCAGAGGCTGGGCGCGCCTTCCGGAGATTCTAGGAATCAGAAGGTCTGTTACCATTGGAGGGCGGGTAAATGTAATCGCTATCCATGTCCTTTCCTTCACCGTGAGTTAAATGCCCCTCCACATGCGGCTTCGAATGGAGCTGTTAATACTGCCTCGAAGAGGGGTCATGGATTCGCCTCTGATGATTCGACTGTTTCTGTTCCCCGACGGAGTCCCAATTTTAGCGGCGGCTCGACGTGGGGACGAGTTCATGGTGGTGGTAATAGAATAATTAGAAAGACAGAGAAGCTTTGTAATTTTTGGGTTCAGGGGAACTGTGGTTATGGGGATAAGTGTAGATACTTACATTCTTGGAGTTTGGGGGAAAGTTTTTCGCATCTAACGCAGCTTGATGGGCATCAGAAGGTTGTAACTGGGATCGCTTTTCCATCTGGTTCTGATAAGCTTTATACTGGTAGTAAAGATGAGACCGTCAGGGTCTGGGACTGCCAGTCCGGGCAGTGCATGGCTGTTATTAATCTTGGCGGAGAAGTTGGTTCCATGATTGCTGAAGGCCCTTGGGTATTTGTTGGCATACCTAATTTCGTTAAGGCATGGAACATTCAGACCTCAGCTGATCTGACTCTTAGCGGACCCGTTGGCCTAGTTTATGCCCTTGTTGTGGGCAATGATTTACTCTTTGCTGGTACACAGGATGGATCCATATTGGCATGGAGATTTAATGCGGCAACCAACTGCTTTGAGCCAGCTGCATCACTCAACGGCCACACCCTTCCTGTTGTTTCATTAGTTGTCGGAGCTAATAGGCTCTACTCTGGTTCCATGGACCATTCTATTAAAGTATGGAGTCTGGAATCTTTACAATGTCTACAGACACTGACAGATCATACATCAGTTGTAATGTCTGTACTTTGCTGGGAGCAATTCCTTTTGTCGTGTTCACTAGATAAGACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTGGAAGTAACTTACACGCAAAAAGAAGATCATGGCCTGCTTACTCTCTGTGGGATGCATGATCAAGATGGGAAGCCTATTTTGTTATGTTCGTGCAATGACAACTCTGTTCGCCTTTATGATTTGCCATCGTTCTCTGAGAGGGGTAAAATATATTCCAAGGAAGAAATTAGATCGATCCAAGCTGGTCCAGGCGGCATCTTCTTTACCGGTGATGGGACTGGACAAGTGAAAGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATCTGGTAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGAGTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCCGTCCCTCTGGCTGAAAGGATACTGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTACGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCTCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCCAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACCCAATCCCCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAGCACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTTCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCATACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTACTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAAATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAGAGGCTGCAGAGTAAGGGAATCAGGTGCTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAAGGTGAATTCATTGAAACAGAGAGTCTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 3921 44.27 MDVDGGGKRVFQRLGAPSGDSRNQKVCYHWRAGKCNRYPCPFLHRELNAPPHAASNGAVNTASKRGHGFASDDSTVSVPRRSPNFSGGSTWGRVHGGGNRIIRKTEKLCNFWVQGNCGYGDKCRYLHSWSLGESFSHLTQLDGHQKVVTGIAFPSGSDKLYTGSKDETVRVWDCQSGQCMAVINLGGEVGSMIAEGPWVFVGIPNFVKAWNIQTSADLTLSGPVGLVYALVVGNDLLFAGTQDGSILAWRFNAATNCFEPAASLNGHTLPVVSLVVGANRLYSGSMDHSIKVWSLESLQCLQTLTDHTSVVMSVLCWEQFLLSCSLDKTIKVWAATESGNLEVTYTQKEDHGLLTLCGMHDQDGKPILLCSCNDNSVRLYDLPSFSERGKIYSKEEIRSIQAGPGGIFFTGDGTGQVKDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLVNRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMSEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLPSLWLKGYCSLIVDWEDSMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITQSFLNPCAHQSHIQSFWRVFPLGVLYSTQSPKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27908105 27937411 - CePI673135_10g013650.1 Cec10g1365 214280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1365 1306 CDD SynN 448 605 IPR006011 GO:0016020(InterPro)
Cec10g1365 1306 SUPERFAMILY CCCH zinc finger 104 128 IPR036855 GO:0046872(InterPro)
Cec10g1365 1306 MobiDBLite consensus disorder prediction 56 90 - -
Cec10g1365 1306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Cec10g1365 1306 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Cec10g1365 1306 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Cec10g1365 1306 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Cec10g1365 1306 ProSitePatterns Syntaxin / epimorphin family signature. 624 663 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec10g1365 1306 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 Pfam WD domain, G-beta repeat 137 173 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 Coils Coil 448 482 - -
Cec10g1365 1306 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872(InterPro)
Cec10g1365 1306 FunFam Syntaxin 132 611 711 - -
Cec10g1365 1306 SMART c3hfinal6 21 46 IPR000571 GO:0046872(InterPro)
Cec10g1365 1306 SMART c3hfinal6 105 129 IPR000571 GO:0046872(InterPro)
Cec10g1365 1306 SMART mt_12 1103 1135 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 1207 1238 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 995 1026 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 1140 1170 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 1175 1206 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 1031 1062 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 959 990 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 1067 1098 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SMART mt_12 923 954 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 Gene3D - 117 218 IPR015943 GO:0005515(InterPro)
Cec10g1365 1306 Gene3D - 448 576 - -
Cec10g1365 1306 Coils Coil 621 641 - -
Cec10g1365 1306 ProSiteProfiles Zinc finger C3H1-type profile. 103 130 IPR000571 GO:0046872(InterPro)
Cec10g1365 1306 Pfam Syntaxin 450 653 IPR006011 GO:0016020(InterPro)
Cec10g1365 1306 Gene3D - 229 433 IPR015943 GO:0005515(InterPro)
Cec10g1365 1306 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 173 - -
Cec10g1365 1306 FunFam Transcription termination factor MTERF4, chloroplastic 1047 1261 - -
Cec10g1365 1306 SMART SynN_4 443 569 IPR006011 GO:0016020(InterPro)
Cec10g1365 1306 CDD SNARE_syntaxin1-like 617 679 - -
Cec10g1365 1306 PANTHER - 21 418 - -
Cec10g1365 1306 FunFam Syntaxin 132 443 572 - -
Cec10g1365 1306 Gene3D - 610 711 - -
Cec10g1365 1306 Pfam CCCH-type zinc finger 107 127 IPR041367 -
Cec10g1365 1306 CDD WD40 137 414 - -
Cec10g1365 1306 Gene3D Transcription termination factor 3, mitochondrial 1048 1262 IPR038538 -
Cec10g1365 1306 Gene3D Transcription termination factor 3, mitochondrial 909 1047 IPR038538 -
Cec10g1365 1306 SUPERFAMILY WD40 repeat-like 127 418 IPR036322 GO:0005515(InterPro)
Cec10g1365 1306 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 FunFam Zinc finger CCCH domain-containing protein 48 129 219 - -
Cec10g1365 1306 SMART WD40_4 340 381 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 SMART WD40_4 213 250 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 SMART WD40_4 257 294 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 SMART WD40_4 134 173 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 SMART WD40_4 297 334 IPR001680 GO:0005515(InterPro)
Cec10g1365 1306 FunFam Zinc finger CCCH domain-containing protein 48 221 423 - -
Cec10g1365 1306 Coils Coil 547 567 - -
Cec10g1365 1306 MobiDBLite consensus disorder prediction 56 89 - -
Cec10g1365 1306 Pfam SNARE domain 654 706 IPR000727 -
Cec10g1365 1306 SMART tSNARE_6 613 680 IPR000727 -
Cec10g1365 1306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 618 680 IPR000727 -
Cec10g1365 1306 MobiDBLite consensus disorder prediction 1 23 - -
Cec10g1365 1306 FunFam Transcription termination factor mterf4, chloroplastic 909 1046 - -
Cec10g1365 1306 Pfam mTERF 945 1253 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cec10g1365 1306 SUPERFAMILY t-snare proteins 448 673 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0541 Cec-Chr2:5186130 Cec10g1365 Cec-Chr10:27908105 1.60E-14 dispersed
Cec02g0885 Cec-Chr2:11094018 Cec10g1365 Cec-Chr10:27908105 2.20E-50 dispersed
Cec02g0887 Cec-Chr2:11139652 Cec10g1365 Cec-Chr10:27908105 9.30E-74 dispersed
Cec02g2543 Cec-Chr2:42473963 Cec10g1365 Cec-Chr10:27908105 3.50E-07 dispersed
Cec03g0052 Cec-Chr3:531947 Cec10g1365 Cec-Chr10:27908105 1.40E-08 dispersed
Cec04g1184 Cec-Chr4:31436433 Cec10g1365 Cec-Chr10:27908105 5.90E-11 dispersed
Cec04g1660 Cec-Chr4:35814281 Cec10g1365 Cec-Chr10:27908105 2.30E-34 dispersed
Cec09g2305 Cec-Chr9:39920781 Cec10g1365 Cec-Chr10:27908105 5.80E-48 dispersed
Cec10g1365 Cec-Chr10:27908105 Cec10g1837 Cec-Chr10:33175462 7.20E-63 dispersed
Cec10g1365 Cec-Chr10:27908105 Cec04g1193 Cec-Chr4:31507906 5.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30386 PF02536 mTERF 1.80E-104 No_clan Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1365 K15031 - csv:101203314 968.378