Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec10g1381 | ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCCGATCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTCAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACCACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA | 708 | 55.37 | MDQSSELYRLLAQNGAFSLGGAGRSCGFPATQSMSSSSSYYPLDKSTAAAASEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANHHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28099448 | 28101110 | - | CePI673135_10g013810.1 | Cec10g1381 | 214296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec10g1381 | 235 | CDD | bHLH_AtAIG1_like | 61 | 136 | - | - | |
| Cec10g1381 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 69 | 115 | IPR011598 | GO:0046983(InterPro) | |
| Cec10g1381 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 69 | 124 | IPR036638 | GO:0046983(InterPro) | |
| Cec10g1381 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 44 | 232 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec10g1381 | 235 | SMART | finulus | 71 | 120 | IPR011598 | GO:0046983(InterPro) | |
| Cec10g1381 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 65 | 114 | IPR011598 | GO:0046983(InterPro) | |
| Cec10g1381 | 235 | Gene3D | - | 61 | 125 | IPR036638 | GO:0046983(InterPro) | |
| Cec10g1381 | 235 | FunFam | transcription factor bHLH30 | 60 | 123 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec06g1087 | Cec-Chr6:20016543 | Cec10g1381 | Cec-Chr10:28099448 | 3.90E-39 | dispersed | |
| Cec08g1202 | Cec-Chr8:23957534 | Cec10g1381 | Cec-Chr10:28099448 | 3.50E-24 | dispersed | |
| Cec10g1381 | Cec-Chr10:28099448 | Cec11g0634 | Cec-Chr11:6953657 | 2.10E-26 | dispersed | |
| Cec10g1381 | Cec-Chr10:28099448 | Cec03g0632 | Cec-Chr3:6773526 | 1.00E-31 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30388 | PF00010 | HLH | 3.60E-12 | No_clan | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec10g1381 | - | - | - | 0.0 |