Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1393 ATGCGGTTATGGCGTCCTCGTTGTTCCCTCTCATCTGTCGGAAACACTCCACGTGAGCCTCTCTTGCTCTTCCGTTCTATCAATCTCTCCTCTTCCCACCAAATTCGGTCGCCAATTTTACTCCACTTCTCGGAATCTCACCGTTTCTCCACATTTTCAATTGCCGAAGACGAGAAGTATGGCTTCTGTCGGCCGGAGATGTATCGGAGCAATCTTTCGGGAACCGTTGCGGCTTACGAGCGCCATGTGTTCCTATGTTATCGAAATCCTGAGGTCTGGCCGTCCCGCGTTGAACACTCGGACGCTGATCTGCTGCCTAAGCTCCTATCTTCTGCCATCAGAGCTCGTAAAAATGAAATTTCTGTTAAGACGAAACTGACAATATGCGAGGCAGGGGAGGGAACGGAGTATTCTGATGGAGATGTATTGATTTTTCCGGAAATGGTCAAATACAGGGGCTTGCAAGATAAAGGTGTGGAGCGGTTTGTTGAGGATGTGCTTTTGAATGGTAAACTGCGGACCTCCGGAGTATACGATGTTTTGGCTGGCTCTTATATTTTTGTATGTGGACATGGTAGTCGGGATAAGAGATGTGGTGTCTGTGGACCAGTTCTTGTTTCAAAACTTAAAGAGGAGATTAAACTGAGAAGGCTGAAGGATCAAATATATGTCCATCCATGTTCACACATTGGTGGACACAAGTATGCTGGTAACTTGATTATATATAGTCCAGATTCAGATGGGAGAATCATGGGGCATTGGTATGGCTATGTTACTCCTGATGATGTGCCTGAATTGCTGGACAAACATATTGGAAAGGGAGAGATAGTAGAAAGGCTTTGGAGGGGTCGAATGGAGAGGACCTATGATGAAGAAGGTAAAAGAAAAGACGAAAATAAACTTCCTAGTGCTGGAATTTACAAGGAAACGGAGGATGATAGCCAAGATTCTGGGTGTAATCTGTCATCAGTTACGGAACTATGGACCTCAGTTCCTGCTTCAATCACACTTTGCCCTGTTGAGTTCTACTGTTCGACCAAGAAGATCAACATTGATGACATAATGCTCTGTGTTGGGTTTTATTCTTTTCAAATCTTCTCTTCCTTGTCCCGGGATTCCATAACCTGCCATGATCAGACTCCAGCACGTCAAGGGGTTCTTCAGGTGAAAAGCATTTCATGTTGCATTAATCAAATAATCAGAGCTGTGGAAATTGAAACATCCAACTCCAAACCTTTACTGGCAACAAGTTCATGGATCCTCTTTTCCTCTTCCAAGTTAGATGCAATTGCTCATGCCTGCAATGCACCTGTCACTGTGATTGGATTGAATTTGTTATCATCGAAGTCTACAAAATCACGTCTGGCTGAGCAAATTCGAAGAAAACGTGGAGTGGCTCATGCATTTTTCCAGATCGAATATAGTTCGATTAACACAGTCTTAACAAACATGTCAAAGTCCACAAGGGTGGATAGTGGAGGTTATGGGACGAGGAGTGAGGGTCACATTATTTTGATAAGGATTATACTGGTTGATAGATACGAACTGGGTTCACTTAAGATGAAGCTCTATAGGCGATTGAGGTGGGCGGTCCCGCTAGTGATTGAGTCCCATTTAGCTGATGCAATCACATCTTTGTGCTGTATTGATTGTGATTTGTCGGAAATCAAAAGCGTGGTCCGTAATGTTTTGAATTTGGCAGCTGCTTCTTTGGGGGATGTACAGTTCTCTCTTGTTCTAATATTCCTGGTCCTGAGTGAAGAAATGGCTTCTGGTAATGGGTTTTATCCCACTGATGAATTCAATTTGGATGCTAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTAACTGAATTACTCACAGGTGGCACATTGCGCAAACATCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCGATCGGGTTTGCGCTTGATATTGCTCGTGCCATGGAGTGTTTACACTCTCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCGTAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAGAAACATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGCTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCATGATCCCACCTCGGATATGTGCTTCTGAAAACGTCGTGATGCCACCCGAATCTCCCGGCACAAATTCCTTGATGGCTGTCAGACATGGCTCGGGGGAAGCCACACACAGCATGATCGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 2823 43.96 MRLWRPRCSLSSVGNTPREPLLLFRSINLSSSHQIRSPILLHFSESHRFSTFSIAEDEKYGFCRPEMYRSNLSGTVAAYERHVFLCYRNPEVWPSRVEHSDADLLPKLLSSAIRARKNEISVKTKLTICEAGEGTEYSDGDVLIFPEMVKYRGLQDKGVERFVEDVLLNGKLRTSGVYDVLAGSYIFVCGHGSRDKRCGVCGPVLVSKLKEEIKLRRLKDQIYVHPCSHIGGHKYAGNLIIYSPDSDGRIMGHWYGYVTPDDVPELLDKHIGKGEIVERLWRGRMERTYDEEGKRKDENKLPSAGIYKETEDDSQDSGCNLSSVTELWTSVPASITLCPVEFYCSTKKINIDDIMLCVGFYSFQIFSSLSRDSITCHDQTPARQGVLQVKSISCCINQIIRAVEIETSNSKPLLATSSWILFSSSKLDAIAHACNAPVTVIGLNLLSSKSTKSRLAEQIRRKRGVAHAFFQIEYSSINTVLTNMSKSTRVDSGGYGTRSEGHIILIRIILVDRYELGSLKMKLYRRLRWAVPLVIESHLADAITSLCCIDCDLSEIKSVVRNVLNLAAASLGDVQFSLVLIFLVLSEEMASGNGFYPTDEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKHLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADRKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPMIPPRICASENVVMPPESPGTNSLMAVRHGSGEATHSMIEETPKSSFFCFNKCY 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28233276 28248906 - CePI673135_10g013930.1 Cec10g1393 214308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1393 940 SUPERFAMILY Thioredoxin-like 185 286 IPR036249 -
Cec10g1393 940 SMART serkin_6 614 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1393 940 Gene3D Phosphorylase Kinase; domain 1 602 693 - -
Cec10g1393 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1393 940 Pfam Sucrase/ferredoxin-like 72 283 IPR009737 -
Cec10g1393 940 FunFam APD1p protein 183 282 - -
Cec10g1393 940 FunFam Kinase suppressor of Ras 1 603 693 - -
Cec10g1393 940 SUPERFAMILY Protein kinase-like (PK-like) 606 897 IPR011009 -
Cec10g1393 940 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 48 419 IPR009737 -
Cec10g1393 940 ProSitePatterns Protein kinases ATP-binding region signature. 620 645 IPR017441 GO:0005524(InterPro)
Cec10g1393 940 CDD STKc_MAP3K-like 620 874 - -
Cec10g1393 940 Gene3D Transferase(Phosphotransferase) domain 1 696 886 - -
Cec10g1393 940 ProSiteProfiles Protein kinase domain profile. 614 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1393 940 Gene3D Glutaredoxin 183 283 - -
Cec10g1393 940 CDD TRX_Fd_Sucrase 183 285 IPR009737 -
Cec10g1393 940 Pfam Protein tyrosine and serine/threonine kinase 618 874 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1393 940 MobiDBLite consensus disorder prediction 291 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1630 Cec-Chr4:35622314 Cec10g1393 Cec-Chr10:28233276 2.20E-74 dispersed
Cec09g2044 Cec-Chr9:37494793 Cec10g1393 Cec-Chr10:28233276 1.50E-147 dispersed
Cec09g2240 Cec-Chr9:39281193 Cec10g1393 Cec-Chr10:28233276 1.30E-77 dispersed
Cec10g1393 Cec-Chr10:28233276 Cec10g2271 Cec-Chr10:36947823 2.20E-114 dispersed
Cec10g1393 Cec-Chr10:28233276 Cec02g2427 Cec-Chr2:41481306 9.50E-12 wgd
Cec10g1393 Cec-Chr10:28233276 Cec06g1938 Cec-Chr6:32730833 2.00E-160 wgd
Cec10g1393 Cec-Chr10:28233276 Cec09g2042 Cec-Chr9:37481860 1.60E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72326 PF07714 PK_Tyr_Ser-Thr 1.30E-55 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1393 - - - 0.0