Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1402 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACTCCGTTTTGCGTTCTCATAGAAAATTGTCTTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCGGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTATCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGTGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1656 43.0 MRIHAPSPLRNEDHTYDSVLRSHRKLSCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28358272 28364530 - CePI673135_10g014020.1 Cec10g1402 214317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1402 551 SUPERFAMILY Protein kinase-like (PK-like) 118 407 IPR011009 -
Cec10g1402 551 Gene3D Transferase(Phosphotransferase) domain 1 198 398 - -
Cec10g1402 551 FunFam Mitogen-activated protein kinase kinase 3 396 550 - -
Cec10g1402 551 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524(InterPro)
Cec10g1402 551 Pfam Protein kinase domain 120 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1402 551 FunFam mitogen-activated protein kinase kinase 3 89 197 - -
Cec10g1402 551 CDD PKc_MAPKK_plant_like 117 376 - -
Cec10g1402 551 Gene3D Phosphorylase Kinase; domain 1 92 197 - -
Cec10g1402 551 ProSiteProfiles Protein kinase domain profile. 116 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1402 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1402 551 Gene3D - 399 549 - -
Cec10g1402 551 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 88 405 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cec10g1402 551 SUPERFAMILY NTF2-like 397 549 IPR032710 -
Cec10g1402 551 ProSiteProfiles Nuclear transport factor 2 domain profile. 399 549 IPR018222 -
Cec10g1402 551 SMART serkin_6 116 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1402 551 FunFam mitogen-activated protein kinase kinase 3 198 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1402 K20607 - - csv:101217978 1009.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1402 Cec-Chr10:28358272 Cec11g0214 Cec-Chr11:2311386 8.50E-66 dispersed
Cec10g1402 Cec-Chr10:28358272 Cec03g1594 Cec-Chr3:34045737 7.90E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec03g1594 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 2.8e-136 481.9
Cec11g0175 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 9.2e-119 423.7
Cec11g0214 . 26 350 MAP Kinase Kinase Gene Family AT4G26070 55.8 1.9e-108 389.4
Cec03g1594 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.2e-133 472.2
Cec11g0175 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 2.9e-117 418.7
Cec11g0214 . 1 324 MAP Kinase Kinase Gene Family AT4G29810 58.4 9.1e-111 397.1
Cec10g1402 . 69 551 MAP Kinase Kinase Gene Family AT5G40440 79.3 2.1e-228 788.5
Cec07g1538 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.8 4.4e-135 478.0
Cec07g1538 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 7.6e-129 457.2
Cec01g1584 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.0e-84 309.7
Cec11g0214 . 1 350 MAP Kinase Kinase Gene Family AT5G56580 84.3 2.4e-170 595.1
Cec03g1594 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 8.6e-120 427.2
Cec11g0175 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.1e-104 374.8
Cec01g1584 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 4.5e-109 391.3
Cec01g1584 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 5.9e-82 301.2
Cec01g1584 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.4 5.6e-115 411.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72328 PF00069 Pkinase 1.50E-59 CL0016 Cec PK