Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1403 ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAACGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCTGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATATGCTCAAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 579 49.74 MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYAQRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28374804 28377080 + CePI673135_10g014030.1 Cec10g1403 214318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1403 192 MobiDBLite consensus disorder prediction 172 192 - -
Cec10g1403 192 Coils Coil 104 124 - -
Cec10g1403 192 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Cec10g1403 192 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
Cec10g1403 192 MobiDBLite consensus disorder prediction 134 160 - -
Cec10g1403 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0553 Cec-Chr7:6641470 Cec10g1403 Cec-Chr10:28374804 5.50E-33 dispersed
Cec09g2359 Cec-Chr9:40416421 Cec10g1403 Cec-Chr10:28374804 2.90E-35 dispersed
Cec10g1403 Cec-Chr10:28374804 Cec11g0606 Cec-Chr11:6664733 2.80E-32 dispersed
Cec02g1407 Cec-Chr2:31271564 Cec10g1403 Cec-Chr10:28374804 2.90E-39 transposed
Cec11g0629 Cec-Chr11:6922287 Cec10g1403 Cec-Chr10:28374804 5.00E-38 transposed
Cec11g1157 Cec-Chr11:23600517 Cec10g1403 Cec-Chr10:28374804 1.70E-46 transposed
Cec09g0066 Cec-Chr9:560485 Cec10g1403 Cec-Chr10:28374804 7.10E-22 transposed
Cec01g1438 Cec-Chr1:29030843 Cec10g1403 Cec-Chr10:28374804 1.10E-48 wgd
Cec10g1403 Cec-Chr10:28374804 Cec06g1923 Cec-Chr6:32617791 6.20E-56 wgd
Cec10g1403 Cec-Chr10:28374804 Cec09g2038 Cec-Chr9:37418146 2.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30389 PF03195 LOB 3.00E-42 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1403 - - - 0.0