Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1449 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCAAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAAACTGAGGTGGCTTCCTTAACTGAGAGATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATGTGTAACATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCCGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGTAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATCGAACATGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 843 47.57 MESGRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLKTEVASLTERCQAQGLNGGEAPIPCVTSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28823661 28828024 + CePI673135_10g014490.1 Cec10g1449 214364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1449 280 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Cec10g1449 280 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1449 280 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec10g1449 280 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Cec10g1449 280 Gene3D - 67 130 - -
Cec10g1449 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 245 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec10g1449 280 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Cec10g1449 280 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Cec10g1449 280 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
Cec10g1449 280 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Cec10g1449 280 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Cec10g1449 280 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Cec10g1449 280 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1530 Cec-Chr1:29892233 Cec10g1449 Cec-Chr10:28823661 1.00E-29 dispersed
Cec05g2695 Cec-Chr5:37521399 Cec10g1449 Cec-Chr10:28823661 1.00E-21 dispersed
Cec10g1449 Cec-Chr10:28823661 Cec11g1483 Cec-Chr11:29044288 4.50E-23 dispersed
Cec10g1449 Cec-Chr10:28823661 Cec09g2002 Cec-Chr9:37033865 1.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30391 PF00046 Homeodomain 4.40E-18 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1449 K09338 - csv:101212142 477.248