Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1452 ATGGATAGAATCATCCAGTCGCCGGTGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCACCGATTCGGCCACCGGCGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTTTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAATGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTACGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCGATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCGCTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCGACGACGACGAGGACGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2148 44.55 MDRIIQSPVSKFRPFRRQLIGSSTDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLNDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSDDDEDDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28866671 28870340 - CePI673135_10g014520.1 Cec10g1452 214367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1452 715 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Cec10g1452 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 693 - -
Cec10g1452 715 Gene3D - 61 381 - -
Cec10g1452 715 Gene3D Jelly Rolls 454 574 IPR014710 -
Cec10g1452 715 Gene3D Helix hairpin bin 383 447 - -
Cec10g1452 715 CDD CAP_ED 456 587 IPR000595 -
Cec10g1452 715 SMART cnmp_10 456 587 IPR000595 -
Cec10g1452 715 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Cec10g1452 715 Pfam Ion transport protein 58 383 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g1452 715 MobiDBLite consensus disorder prediction 701 715 - -
Cec10g1452 715 MobiDBLite consensus disorder prediction 683 698 - -
Cec10g1452 715 MobiDBLite consensus disorder prediction 683 715 - -
Cec10g1452 715 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Cec10g1452 715 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
Cec10g1452 715 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Cec10g1452 715 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1452 Cec-Chr10:28866671 Cec10g1481 Cec-Chr10:29194528 9.00E-185 dispersed
Cec02g2234 Cec-Chr2:39774418 Cec10g1452 Cec-Chr10:28866671 1.70E-202 transposed
Cec04g1044 Cec-Chr4:29986672 Cec10g1452 Cec-Chr10:28866671 3.20E-173 transposed
Cec05g2877 Cec-Chr5:38943659 Cec10g1452 Cec-Chr10:28866671 1.50E-243 transposed
Cec06g1481 Cec-Chr6:28330910 Cec10g1452 Cec-Chr10:28866671 3.10E-241 transposed
Cec07g1814 Cec-Chr7:33856153 Cec10g1452 Cec-Chr10:28866671 5.30E-70 transposed
Cec10g0625 Cec-Chr10:8379962 Cec10g1452 Cec-Chr10:28866671 1.70E-97 transposed
Cec11g0480 Cec-Chr11:5168778 Cec10g1452 Cec-Chr10:28866671 1.20E-101 transposed
Cec10g1452 Cec-Chr10:28866671 Cec06g1888 Cec-Chr6:32183045 7.40E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1452 K05391 - csv:101216651 1340.1