Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1498 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAATCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTATTCAAAAACGGCCACTCTGGATTATTTTTGGACGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGACTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGACGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.9 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVTSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29345860 29347461 + CePI673135_10g014980.1 Cec10g1498 214413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1498 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Cec10g1498 436 Gene3D - 86 429 IPR012334 -
Cec10g1498 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
Cec10g1498 436 Pfam Pectate lyase 171 352 IPR002022 -
Cec10g1498 436 SMART amb_all 161 358 IPR002022 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cec10g1498 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cec10g1498 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0930 Cec-Chr8:21099033 Cec10g1498 Cec-Chr10:29345860 2.50E-185 dispersed
Cec09g2059 Cec-Chr9:37643072 Cec10g1498 Cec-Chr10:29345860 2.00E-128 dispersed
Cec01g1533 Cec-Chr1:29916046 Cec10g1498 Cec-Chr10:29345860 1.60E-179 wgd
Cec10g1498 Cec-Chr10:29345860 Cec05g2688 Cec-Chr5:37456422 1.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1498 K01728 - csv:101202789 826.239