Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec10g1500 | ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGTAATAACAGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTTTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCACAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAATGCCCCACTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCAACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA | 1176 | 46.0 | MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGNNRAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAATSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLNSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA | 391 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29363872 | 29368020 | + | CePI673135_10g015000.1 | Cec10g1500 | 214415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec10g1500 | 391 | MobiDBLite | consensus disorder prediction | 40 | 64 | - | - | |
Cec10g1500 | 391 | CDD | AP2 | 166 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 258 | - | - | |
Cec10g1500 | 391 | FunFam | AP2-like ethylene-responsive transcription factor | 166 | 227 | - | - | |
Cec10g1500 | 391 | PRINTS | Ethylene responsive element binding protein signature | 207 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | SMART | rav1_2 | 65 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | SMART | rav1_2 | 167 | 231 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | CDD | AP2 | 64 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | SUPERFAMILY | DNA-binding domain | 64 | 133 | IPR016177 | GO:0003677(InterPro) | |
Cec10g1500 | 391 | MobiDBLite | consensus disorder prediction | 30 | 66 | - | - | |
Cec10g1500 | 391 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | ProSiteProfiles | AP2/ERF domain profile. | 167 | 225 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | Pfam | AP2 domain | 166 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | Gene3D | AP2/ERF domain | 166 | 226 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | Gene3D | AP2/ERF domain | 64 | 133 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec10g1500 | 391 | SUPERFAMILY | DNA-binding domain | 166 | 227 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2427 | Cec-Chr5:35504013 | Cec10g1500 | Cec-Chr10:29363872 | 1.00E-74 | dispersed | |
Cec09g0344 | Cec-Chr9:2893611 | Cec10g1500 | Cec-Chr10:29363872 | 6.20E-73 | dispersed | |
Cec10g1500 | Cec-Chr10:29363872 | Cec11g0922 | Cec-Chr11:14235145 | 1.50E-64 | dispersed | |
Cec10g1500 | Cec-Chr10:29363872 | Cec08g0914 | Cec-Chr8:20976427 | 9.90E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30396 | PF00847 | AP2 | 1.70E-08 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec10g1500 | - | - | - | 0.0 |