Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1500 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGTAATAACAGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTTTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCACAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAATGCCCCACTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCAACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1176 46.0 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGNNRAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAATSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLNSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29363872 29368020 + CePI673135_10g015000.1 Cec10g1500 214415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1500 391 MobiDBLite consensus disorder prediction 40 64 - -
Cec10g1500 391 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 258 - -
Cec10g1500 391 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Cec10g1500 391 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 SMART rav1_2 65 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 CDD AP2 64 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 SUPERFAMILY DNA-binding domain 64 133 IPR016177 GO:0003677(InterPro)
Cec10g1500 391 MobiDBLite consensus disorder prediction 30 66 - -
Cec10g1500 391 ProSiteProfiles AP2/ERF domain profile. 65 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 Gene3D AP2/ERF domain 64 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1500 391 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2427 Cec-Chr5:35504013 Cec10g1500 Cec-Chr10:29363872 1.00E-74 dispersed
Cec09g0344 Cec-Chr9:2893611 Cec10g1500 Cec-Chr10:29363872 6.20E-73 dispersed
Cec10g1500 Cec-Chr10:29363872 Cec11g0922 Cec-Chr11:14235145 1.50E-64 dispersed
Cec10g1500 Cec-Chr10:29363872 Cec08g0914 Cec-Chr8:20976427 9.90E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30396 PF00847 AP2 1.70E-08 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1500 - - - 0.0