Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1600 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAGACCCCGACTCCGCCACTGCCACCGTCACCGCCCCGGCTCCTTGTGGTGCATGCAAGTTTCTCAGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGCCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCCACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGTGTTGCATCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCATCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCCTCTTCGCCGATTAA 696 53.3 MADADQFPRRKPLGNKRASAANRDPDSATATVTAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGVLHPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPALFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30392734 30395009 - CePI673135_10g016000.1 Cec10g1600 214515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1600 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cec10g1600 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cec10g1600 231 MobiDBLite consensus disorder prediction 1 31 - -
Cec10g1600 231 MobiDBLite consensus disorder prediction 193 231 - -
Cec10g1600 231 Coils Coil 117 137 - -
Cec10g1600 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0783 Cec-Chr9:7182849 Cec10g1600 Cec-Chr10:30392734 2.60E-35 dispersed
Cec10g1600 Cec-Chr10:30392734 Cec11g1157 Cec-Chr11:23600517 2.20E-23 dispersed
Cec10g1600 Cec-Chr10:30392734 Cec06g0038 Cec-Chr6:382522 1.60E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30405 PF03195 LOB 1.50E-37 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1600 - - - 0.0