Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1628 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACCGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCAACAGGAAGTGGAGGTGAATCTTATCATCACTGACTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATTGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAAGAAGAGTTTGAGTTTGAGATGAAGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 678 42.48 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHQQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMKSKKRKGGVDEESVETERRRRRRRFDNNGVATVI 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30724162 30725445 - CePI673135_10g016280.1 Cec10g1628 214543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1628 225 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cec10g1628 225 MobiDBLite consensus disorder prediction 158 225 - -
Cec10g1628 225 CDD REC_typeA_ARR 11 148 - -
Cec10g1628 225 Pfam Response regulator receiver domain 76 142 IPR001789 GO:0000160(InterPro)
Cec10g1628 225 Coils Coil 161 181 - -
Cec10g1628 225 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 210 IPR045279 GO:0009736(InterPro)
Cec10g1628 225 Gene3D - 10 221 - -
Cec10g1628 225 MobiDBLite consensus disorder prediction 164 186 - -
Cec10g1628 225 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
Cec10g1628 225 MobiDBLite consensus disorder prediction 187 218 - -
Cec10g1628 225 SUPERFAMILY CheY-like 8 166 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0555 Cec-Chr4:22848952 Cec10g1628 Cec-Chr10:30724162 3.60E-54 dispersed
Cec05g2913 Cec-Chr5:39237960 Cec10g1628 Cec-Chr10:30724162 3.20E-49 dispersed
Cec06g1863 Cec-Chr6:31985770 Cec10g1628 Cec-Chr10:30724162 6.70E-38 dispersed
Cec07g0579 Cec-Chr7:7332711 Cec10g1628 Cec-Chr10:30724162 8.60E-40 dispersed
Cec08g0604 Cec-Chr8:17555276 Cec10g1628 Cec-Chr10:30724162 6.20E-39 dispersed
Cec10g1628 Cec-Chr10:30724162 Cec05g2725 Cec-Chr5:37768331 1.60E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30408 PF00072 Response_reg 3.60E-13 CL0304 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1628 K14492 - csv:101220810 308.145