Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1646 ATGAGGAAAGAGGGAGGGTTTACGAAGAAAATGGGAAAGTCGATATGGTTCAAAGTTTTGGTGATTTTTGTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCAAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACATTGCCATTACAGAAAGAGTCAAATCCAAACTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGATCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGACGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTAATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1524 44.23 MRKEGGFTKKMGKSIWFKVLVIFVGFELIDELEAGELIAEVLITVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30977939 30986401 + CePI673135_10g016460.1 Cec10g1646 214561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1646 507 PANTHER TRANSCRIPTION FACTOR TGA9 180 507 - -
Cec10g1646 507 CDD bZIP_HBP1b-like 222 273 - -
Cec10g1646 507 MobiDBLite consensus disorder prediction 149 183 - -
Cec10g1646 507 Pfam Seed dormancy control 305 379 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cec10g1646 507 Coils Coil 241 268 - -
Cec10g1646 507 Pfam bZIP transcription factor 221 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1646 507 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1646 507 MobiDBLite consensus disorder prediction 184 199 - -
Cec10g1646 507 ProSiteProfiles DOG1 domain profile. 287 504 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cec10g1646 507 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1646 507 SUPERFAMILY Leucine zipper domain 222 265 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1646 507 Gene3D - 221 273 - -
Cec10g1646 507 FunFam BZIP family transcription factor 221 270 - -
Cec10g1646 507 SMART brlzneu 218 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1646 507 MobiDBLite consensus disorder prediction 149 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1100 Cec-Chr8:22827086 Cec10g1646 Cec-Chr10:30977939 9.20E-132 dispersed
Cec10g1646 Cec-Chr10:30977939 Cec10g1751 Cec-Chr10:32194494 1.20E-87 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30409 PF14144 DOG1 9.30E-30 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1646 K14431 - csv:101219149 850.892