Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1729 ATGGGTGCGGTTAAATTATTTCCAAGGCTTCCACTTCCTCTCAGCACCCTCATAATTTCTCACTCTCCAGAGTCAAACACTCTCTTCCAAGCTCTAGATCGATCTCTCTCACTCCTTGAATCATCATTGACTTCCATTTTCTCCCTAATTTTTGCTCGCATTTCTCTCAATGAAGGAAGCATGTTGTGTGCCATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCGCGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAATTAGTTTCTTCTCCAACAAAGTCAAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGTTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCCCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGCGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2301 46.24 MGAVKLFPRLPLPLSTLIISHSPESNTLFQALDRSLSLLESSLTSIFSLIFARISLNEGSMLCAMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFPPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31956179 31960203 + CePI673135_10g017290.1 Cec10g1729 214644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1729 766 ProSiteProfiles Ankyrin repeat region circular profile. 156 190 - -
Cec10g1729 766 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 361 IPR000571 GO:0046872(InterPro)
Cec10g1729 766 ProSiteProfiles Zinc finger C3H1-type profile. 341 363 IPR000571 GO:0046872(InterPro)
Cec10g1729 766 SUPERFAMILY Ankyrin repeat 70 201 IPR036770 -
Cec10g1729 766 Gene3D - 73 215 IPR036770 -
Cec10g1729 766 MobiDBLite consensus disorder prediction 230 259 - -
Cec10g1729 766 MobiDBLite consensus disorder prediction 711 735 - -
Cec10g1729 766 PANTHER UNKEMPT FAMILY MEMBER 115 711 IPR045234 -
Cec10g1729 766 Gene3D - 336 399 - -
Cec10g1729 766 Pfam Ankyrin repeats (3 copies) 118 190 IPR002110 GO:0005515(InterPro)
Cec10g1729 766 FunFam Zinc finger CCCH domain-containing protein 66 294 362 - -
Cec10g1729 766 SMART c3hfinal6 336 362 IPR000571 GO:0046872(InterPro)
Cec10g1729 766 SMART c3hfinal6 371 394 IPR000571 GO:0046872(InterPro)
Cec10g1729 766 ProSiteProfiles Ankyrin repeat profile. 156 191 IPR002110 GO:0005515(InterPro)
Cec10g1729 766 SMART ANK_2a 156 188 IPR002110 GO:0005515(InterPro)
Cec10g1729 766 SMART ANK_2a 121 151 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1649 Cec-Chr3:34662962 Cec10g1729 Cec-Chr10:31956179 4.80E-52 dispersed
Cec07g0486 Cec-Chr7:5458420 Cec10g1729 Cec-Chr10:31956179 1.60E-131 dispersed
Cec10g1241 Cec-Chr10:26560162 Cec10g1729 Cec-Chr10:31956179 1.90E-243 dispersed
Cec10g1729 Cec-Chr10:31956179 Cec11g0201 Cec-Chr11:2165280 1.40E-50 dispersed
Cec10g1729 Cec-Chr10:31956179 Cec02g2051 Cec-Chr2:38237698 1.10E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30418 PF12796 Ank_2 2.20E-09 CL0465 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1729 - - - 0.0