Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1767 ATGGAAATCGACTCACTGAAGAATCTCCAGCGCAAGCAGTGTACCTATGAAATATTGGATGAGCAGTACAAGATTCAGAAGGAGACATACAGGGGCCAGCAATACAGTCACATTTACTTTGCTCGACTCCACTTGATGAGAACGATACTCCATTCACTTGTCTCTAAGTGGAAACCACATTTACCTGTTTGCACTGTATTGGGATTAGAGGAAGGCAAGGAATGTGTCATTGTTGGAACCGCCTACAAGCACATGAAACTTAAACCCACCATTCTGGACGAGTATTCAAAGGAGAGATCTGCCACCCCCCTTGTTAAGCCACACAACTTTATGCACCCAGATGATCATCTAGTATTGGAAGATGAAAGTGGGAGAGTAAAGCTTTCTGGGGATGTGCTTTTACCTTCTGTATATGTTACAGGGATCGTCCTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGGCTTGCCACCCCAGATAGAGCGGCCGCTCATATCAAGCGAAGATAAGTACGTGATTTTTGTGTCGGGCCTAAGTATTGGGAGTAGCATCTCTAATCCTCTACAGTTTCAGCTTCTTGTTGATCATATAACAGGACATTTAGGGGACGAGAAGGAACAAGGGATTGCGGCTCAAATAGTTAATGTTGTCATTTGTGGGAATTCAGTTGAAATTCCTCGAGGAATTTTAAATGGGCAGCATTTGTCTGCGAAGGACCAAACAAAGCTGATGGAACCACTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGACATCATGCCAGGGTCCAGTGACCCAGCCAATTTCTCCTTGCCTCAGCAGCCTTTACACAGATGCCTTTTTCCTGGATCATCAGCTTATAACACTTTCAGATCTTGCACTAACCCTCATTGTTTTGAGCTTGATAATTTCAGGTTTCTTGGAACATCAGGACAGAATGTAGATGATCTCGAGAAGTACTCAGAGGCTAGAGATAAACTTGAATTTATGGAGAGGACTTTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTTGGTTGCTACCCATTCACTGATCGGGATCCTTTCCTAATTGAGAGCTGTCCTCATGTTTATTTTATTGGCAATCAGGACAATTTTGATACTCGCTTAATAAAGGGAGCTGAAGGGCAGATGGTAAGACTCATTGCAATTCCAAGATTTTGCGAGAAGGGGGTTGCCGTAGTGCTAAACTTGAGAAACCTTGAATGCCACACACTGAGTTTTGGGACTGAATTAAGCTGA 1317 43.58 MEIDSLKNLQRKQCTYEILDEQYKIQKETYRGQQYSHIYFARLHLMRTILHSLVSKWKPHLPVCTVLGLEEGKECVIVGTAYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDHLVLEDESGRVKLSGDVLLPSVYVTGIVLALHGKETCVGDFLVLDILEAGLPPQIERPLISSEDKYVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVNVVICGNSVEIPRGILNGQHLSAKDQTKLMEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNFRFLGTSGQNVDDLEKYSEARDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDNFDTRLIKGAEGQMVRLIAIPRFCEKGVAVVLNLRNLECHTLSFGTELS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32399543 32405526 + CePI673135_10g017670.1 Cec10g1767 214682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1767 438 CDD MPP_PolD2_C 181 433 IPR041863 -
Cec10g1767 438 Gene3D - 169 437 - -
Cec10g1767 438 Pfam DNA polymerase alpha/epsilon subunit B 182 392 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cec10g1767 438 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 431 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Cec10g1767 438 Gene3D - 40 164 - -
Cec10g1767 438 FunFam DNA polymerase delta small subunit 169 438 - -
Cec10g1767 438 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1767 K02328 - - csv:101221438 849.736
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1268 . . . . . Bpe03g01146 . Bma10g00174 . Cmo14g00422 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0534 Cone19ag0482 . . . Cme04g02239 Blo07g01274 . . Bda05g01086 . . . . Sed02g0364 . . . Cma14g00418 . Car14g00385 Cpe03g00370 . Bhi11g02541 Tan08g1499 Cmetu04g0761 . . . . Cla10g01668 Cam10g1715 Cec10g1767 Cco10g1734 Clacu10g1736 Cmu10g2486 Cre10g1868 Lsi03g01734 Csa03g03577 Chy04g01776 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0257 . 105 657 Core DNA Replication Machinery Family AT4G14700 65.9 2.0e-212 736.1
Cec08g0257 . 105 660 Core DNA Replication Machinery Family AT4G12620 67.7 9.8e-220 760.4
Cec08g1624 . 65 425 Core DNA Replication Machinery Family AT2G37560 64.8 5.6e-140 494.2
Cec07g0530 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 1.5e-150 529.6
Cec06g0376 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cec11g0910 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 6.5e-94 340.9
Cec09g2365 . 68 863 Core DNA Replication Machinery Family AT1G79150 58.8 1.0e-243 840.1
Cec10g1313 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1352.8
Cec04g2153 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cec02g0506 . 192 1036 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1147.5
Cec11g0370 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1111.7
Cec04g2312 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1173.3
Cec09g0509 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1220.3
Cec02g2065 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.4 6.7e-158 554.3
Cec02g2065 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 1.5e-143 506.5
Cec09g0868 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cec10g2063 . 12 783 Core DNA Replication Machinery Family AT3G09660 73.8 0.0e+00 1109.4
Cec09g1700 . 22 420 Core DNA Replication Machinery Family AT2G14050 85.2 4.6e-196 681.4
Cec09g1698 . 9 242 Core DNA Replication Machinery Family AT2G14050 67.9 1.7e-86 317.4
Cec02g1251 . 1926 2304 Core DNA Replication Machinery Family AT2G20980 56.2 6.5e-108 387.9
Cec09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Cec05g0169 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.1e-49 193.4
Cec02g1303 . 9 1536 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1744.6
Cec01g1709 . 118 740 Core DNA Replication Machinery Family AT1G67630 60.5 2.1e-214 742.3
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec08g0101 . 196 639 Core DNA Replication Machinery Family AT5G41880 65.0 2.2e-176 615.5
Cec04g1199 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cec10g1767 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.3e-205 712.6
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec01g0547 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 4.9e-38 154.1
Cec02g2314 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2988.0
Cec09g2157 . 83 2096 Core DNA Replication Machinery Family AT1G08260 68.2 0.0e+00 2788.4
Cec02g2314 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2955.6
Cec09g2157 . 106 2203 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2751.1
Cec01g1812 . 681 1116 Core DNA Replication Machinery Family AT5G22110 71.1 3.1e-184 641.7
Cec02g2368 . 74 998 Core DNA Replication Machinery Family AT5G22010 63.2 7.7e-306 1046.6
Cec10g0359 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cec04g0586 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 4.1e-178 620.9
Cec11g1645 . 63 381 Core DNA Replication Machinery Family AT1G21690 81.6 1.6e-144 509.2
Cec08g0611 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 1.3e-155 546.2
Cec11g0165 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.7 3.0e-245 844.7
Cec10g0110 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 3.4e-196 681.8
Cec06g1758 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 1.8e-247 852.0
Cec10g0110 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.3 5.1e-227 784.6
Cec06g1758 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.6 1.5e-239 825.9
Cec10g0110 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.4 1.5e-225 779.6
Cec03g1851 . 1 568 Core DNA Replication Machinery Family AT5G26680 58.5 5.8e-168 587.4
Cec05g0315 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 3.3e-300 1028.1
Cec07g1686 . 1 282 Core DNA Replication Machinery Family AT2G25100 66.7 7.7e-108 387.1
Cec02g2268 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 8.7e-298 1019.6
Cec02g2268 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 3.3e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005225 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 1 39