Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1770 ATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATCTCTTTCCCTGGTCAACGAGAGGAGAGGATCGTCCGATGTGAAGGGCATAACGGTCCAGGAGAGGGCGATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTTCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1404 47.01 MRWSSSRNQETESLSLVNERRGSSDVKGITVQERAMTEKLDSWIQRECDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32419855 32424775 - CePI673135_10g017700.1 Cec10g1770 214685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1770 467 SMART actin_3 97 467 IPR004000 -
Cec10g1770 467 Gene3D - 230 430 - -
Cec10g1770 467 SUPERFAMILY Actin-like ATPase domain 239 467 IPR043129 -
Cec10g1770 467 PRINTS Actin signature 118 127 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 141 152 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 207 220 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 232 251 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 328 344 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 153 175 IPR004000 -
Cec10g1770 467 Gene3D Actin; Chain A, domain 4 272 363 - -
Cec10g1770 467 CDD NBD_sugar-kinase_HSP70_actin 100 273 - -
Cec10g1770 467 PANTHER ACTIN 98 459 IPR004000 GO:0005737(PANTHER)
Cec10g1770 467 FunFam Actin, muscle 272 363 - -
Cec10g1770 467 Gene3D - 100 461 - -
Cec10g1770 467 ProSitePatterns Actins signature 1. 145 155 IPR004001 -
Cec10g1770 467 SUPERFAMILY Actin-like ATPase domain 96 245 IPR043129 -
Cec10g1770 467 FunFam Actin, alpha skeletal muscle 93 256 - -
Cec10g1770 467 FunFam Major actin 350 430 - -
Cec10g1770 467 Pfam Actin 95 467 IPR004000 -
Cec10g1770 467 ProSitePatterns Actins and actin-related proteins signature. 196 208 IPR020902 -
Cec10g1770 467 FunFam Putative actin-related protein 5 431 459 - -
Cec10g1770 467 ProSitePatterns Actins signature 2. 448 456 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1770 K10355 - - mdm:103443130 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0074 Cec-Chr2:706262 Cec10g1770 Cec-Chr10:32419855 6.70E-205 dispersed
Cec04g0957 Cec-Chr4:29257562 Cec10g1770 Cec-Chr10:32419855 8.50E-208 dispersed
Cec04g1250 Cec-Chr4:32084613 Cec10g1770 Cec-Chr10:32419855 4.50E-202 dispersed
Cec07g0364 Cec-Chr7:3589718 Cec10g1770 Cec-Chr10:32419855 9.50E-218 dispersed
Cec09g1439 Cec-Chr9:21203217 Cec10g1770 Cec-Chr10:32419855 1.00E-211 dispersed
Cec09g2081 Cec-Chr9:37827119 Cec10g1770 Cec-Chr10:32419855 4.00E-216 dispersed
Cec10g1770 Cec-Chr10:32419855 Cec11g0747 Cec-Chr11:8506068 8.20E-94 dispersed
Cec10g1770 Cec-Chr10:32419855 Cec02g2127 Cec-Chr2:38824229 3.40E-217 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT2G37620 97.2 4.1e-205 710.7
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.9e-214 740.3
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G59370 96.9 3.9e-203 704.1
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.2e-214 741.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G46520 97.2 1.7e-203 705.3
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.1e-213 737.3
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G12110 96.9 2.1e-204 708.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.2e-209 723.4
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.1e-209 724.9
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.8e-212 733.0
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G09810 96.7 1.0e-203 706.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 4.4e-53 204.1
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.8e-50 193.4
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 9.2e-51 196.4
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cec11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 1.5e-53 205.7
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 2.9e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276