Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1770 ATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATCTCTTTCCCTGGTCAACGAGAGGAGAGGATCGTCCGATGTGAAGGGCATAACGGTCCAGGAGAGGGCGATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTTCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1404 47.01 MRWSSSRNQETESLSLVNERRGSSDVKGITVQERAMTEKLDSWIQRECDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32419855 32424775 - CePI673135_10g017700.1 Cec10g1770 214685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1770 467 SMART actin_3 97 467 IPR004000 -
Cec10g1770 467 Gene3D - 230 430 - -
Cec10g1770 467 SUPERFAMILY Actin-like ATPase domain 239 467 IPR043129 -
Cec10g1770 467 PRINTS Actin signature 118 127 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 141 152 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 207 220 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 232 251 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 328 344 IPR004000 -
Cec10g1770 467 PRINTS Actin signature 153 175 IPR004000 -
Cec10g1770 467 Gene3D Actin; Chain A, domain 4 272 363 - -
Cec10g1770 467 CDD NBD_sugar-kinase_HSP70_actin 100 273 - -
Cec10g1770 467 PANTHER ACTIN 98 459 IPR004000 GO:0005737(PANTHER)
Cec10g1770 467 FunFam Actin, muscle 272 363 - -
Cec10g1770 467 Gene3D - 100 461 - -
Cec10g1770 467 ProSitePatterns Actins signature 1. 145 155 IPR004001 -
Cec10g1770 467 SUPERFAMILY Actin-like ATPase domain 96 245 IPR043129 -
Cec10g1770 467 FunFam Actin, alpha skeletal muscle 93 256 - -
Cec10g1770 467 FunFam Major actin 350 430 - -
Cec10g1770 467 Pfam Actin 95 467 IPR004000 -
Cec10g1770 467 ProSitePatterns Actins and actin-related proteins signature. 196 208 IPR020902 -
Cec10g1770 467 FunFam Putative actin-related protein 5 431 459 - -
Cec10g1770 467 ProSitePatterns Actins signature 2. 448 456 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0074 Cec-Chr2:706262 Cec10g1770 Cec-Chr10:32419855 6.70E-205 dispersed
Cec04g0957 Cec-Chr4:29257562 Cec10g1770 Cec-Chr10:32419855 8.50E-208 dispersed
Cec04g1250 Cec-Chr4:32084613 Cec10g1770 Cec-Chr10:32419855 4.50E-202 dispersed
Cec07g0364 Cec-Chr7:3589718 Cec10g1770 Cec-Chr10:32419855 9.50E-218 dispersed
Cec09g1439 Cec-Chr9:21203217 Cec10g1770 Cec-Chr10:32419855 1.00E-211 dispersed
Cec09g2081 Cec-Chr9:37827119 Cec10g1770 Cec-Chr10:32419855 4.00E-216 dispersed
Cec10g1770 Cec-Chr10:32419855 Cec11g0747 Cec-Chr11:8506068 8.20E-94 dispersed
Cec10g1770 Cec-Chr10:32419855 Cec02g2127 Cec-Chr2:38824229 3.40E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1770 K10355 - mdm:103443130 750.74