Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1776 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATCACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCACTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAATGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTGAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATATGTCGAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1284 43.54 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKMCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDMSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32480947 32482230 + CePI673135_10g017760.1 Cec10g1776 214691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1776 427 SUPERFAMILY RING/U-box 137 194 - -
Cec10g1776 427 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cec10g1776 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cec10g1776 427 MobiDBLite consensus disorder prediction 396 427 - -
Cec10g1776 427 CDD RING-HC_AtRMA-like 139 182 - -
Cec10g1776 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 112 367 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cec10g1776 427 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Cec10g1776 427 MobiDBLite consensus disorder prediction 251 272 - -
Cec10g1776 427 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cec10g1776 427 MobiDBLite consensus disorder prediction 350 369 - -
Cec10g1776 427 SMART ring_2 141 181 IPR001841 -
Cec10g1776 427 FunFam Zinc finger family protein 122 195 - -
Cec10g1776 427 MobiDBLite consensus disorder prediction 396 416 - -
Cec10g1776 427 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0585 Cec-Chr3:6195448 Cec10g1776 Cec-Chr10:32480947 2.70E-23 dispersed
Cec05g1427 Cec-Chr5:16688872 Cec10g1776 Cec-Chr10:32480947 1.40E-07 dispersed
Cec10g1277 Cec-Chr10:26908659 Cec10g1776 Cec-Chr10:32480947 4.50E-33 dispersed
Cec10g1776 Cec-Chr10:32480947 Cec11g1856 Cec-Chr11:32755407 4.50E-22 dispersed
Cec10g1776 Cec-Chr10:32480947 Cec04g1309 Cec-Chr4:32698725 1.30E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1776 K10666 - csv:101220497 785.793