Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec10g1831 | ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGTGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGAAGTTGA | 498 | 54.82 | MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAASGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33120336 | 33120833 | - | CePI673135_10g018310.1 | Cec10g1831 | 214746 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec10g1831 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Cec10g1831 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - | |
| Cec10g1831 | 165 | CDD | RING-H2_PA-TM-RING | 100 | 142 | - | - | |
| Cec10g1831 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 12 | 159 | IPR045899 | - | |
| Cec10g1831 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 147 | IPR013083 | - | |
| Cec10g1831 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Cec10g1831 | 165 | SUPERFAMILY | RING/U-box | 74 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec05g0147 | Cec-Chr5:1233270 | Cec10g1831 | Cec-Chr10:33120336 | 1.20E-24 | dispersed | |
| Cec08g0844 | Cec-Chr8:20247967 | Cec10g1831 | Cec-Chr10:33120336 | 4.60E-15 | dispersed | |
| Cec08g1098 | Cec-Chr8:22811002 | Cec10g1831 | Cec-Chr10:33120336 | 1.40E-25 | dispersed | |
| Cec10g1676 | Cec-Chr10:31267463 | Cec10g1831 | Cec-Chr10:33120336 | 8.60E-08 | dispersed | |
| Cec10g1831 | Cec-Chr10:33120336 | Cec11g0702 | Cec-Chr11:7759792 | 3.20E-08 | dispersed | |
| Cec10g1831 | Cec-Chr10:33120336 | Cec04g1194 | Cec-Chr4:31512533 | 1.00E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec10g1831 | - | - | - | 0.0 |