Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1837 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTTCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGGGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAGGACCTGGAAAGGAACCTCAAAGAGTTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTACGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCGAAGTGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGGTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTTGATGTTGTGAGGGGTATACCAATCAAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 1992 45.38 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDFHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMITLLLRRDRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSKRILRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTEVGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKVLSFSNLYIGINGCSLKTTENLDVVRGIPIKRLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 663
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 33175462 33182711 - CePI673135_10g018370.1 Cec10g1837 214752
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1837 663 MobiDBLite consensus disorder prediction 104 123 - -
Cec10g1837 663 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cec10g1837 663 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cec10g1837 663 FunFam Syntaxin 132 194 292 - -
Cec10g1837 663 Pfam SNARE domain 238 288 IPR000727 -
Cec10g1837 663 MobiDBLite consensus disorder prediction 109 123 - -
Cec10g1837 663 FunFam Putative tatD related deoxyribonuclease 341 647 - -
Cec10g1837 663 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 334 651 IPR050891 GO:0005829(PANTHER)|GO:0008296(PANTHER)
Cec10g1837 663 SMART tSNARE_6 196 263 IPR000727 -
Cec10g1837 663 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cec10g1837 663 SUPERFAMILY Metallo-dependent hydrolases 346 641 IPR032466 -
Cec10g1837 663 ProSitePatterns TatD deoxyribonuclease family signature 3. 552 568 IPR018228 -
Cec10g1837 663 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cec10g1837 663 Coils Coil 204 224 - -
Cec10g1837 663 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cec10g1837 663 Gene3D - 336 647 - -
Cec10g1837 663 Gene3D - 29 161 - -
Cec10g1837 663 ProSitePatterns TatD deoxyribonuclease family signature 2. 488 498 IPR018228 -
Cec10g1837 663 Pfam TatD related DNase 367 640 IPR001130 GO:0016788(InterPro)
Cec10g1837 663 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec10g1837 663 CDD SNARE_syntaxin1-like 200 262 - -
Cec10g1837 663 Coils Coil 31 58 - -
Cec10g1837 663 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec10g1837 663 CDD TatD_DNAse 346 641 IPR001130 GO:0016788(InterPro)
Cec10g1837 663 Gene3D - 198 292 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0715 Cec-Chr4:26294206 Cec10g1837 Cec-Chr10:33175462 3.70E-58 dispersed
Cec10g1365 Cec-Chr10:27908105 Cec10g1837 Cec-Chr10:33175462 7.20E-63 dispersed
Cec03g0540 Cec-Chr3:5659439 Cec10g1837 Cec-Chr10:33175462 1.60E-90 transposed
Cec04g1660 Cec-Chr4:35814281 Cec10g1837 Cec-Chr10:33175462 1.80E-47 transposed
Cec10g1837 Cec-Chr10:33175462 Cec04g1193 Cec-Chr4:31507906 4.70E-111 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1837 K03424 - csv:101209174 633.254