Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1844 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATTCGCCGTCTCCGCTCCATATCCGCCGAGTCTGAAACTAATCGACGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGCATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAAATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCGATGGATTTACTCTGTGGGTGTGCAGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGATGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTACTTCATATCCTCCAAATTAA 1218 49.43 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISAESETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTHFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKMKEKAREILKMHARVWKNSPCIPSKLATSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33283467 33284684 - CePI673135_10g018440.1 Cec10g1844 214759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1844 405 Gene3D - 96 389 IPR011989 -
Cec10g1844 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cec10g1844 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cec10g1844 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec10g1844 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec10g1844 405 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630(InterPro)
Cec10g1844 405 SUPERFAMILY RING/U-box 4 85 - -
Cec10g1844 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec10g1844 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cec10g1844 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1272 Cec-Chr3:28282672 Cec10g1844 Cec-Chr10:33283467 2.20E-74 dispersed
Cec03g1280 Cec-Chr3:28540002 Cec10g1844 Cec-Chr10:33283467 8.70E-76 dispersed
Cec05g0305 Cec-Chr5:2486846 Cec10g1844 Cec-Chr10:33283467 5.20E-52 dispersed
Cec06g0072 Cec-Chr6:698157 Cec10g1844 Cec-Chr10:33283467 4.70E-38 dispersed
Cec07g0254 Cec-Chr7:2492177 Cec10g1844 Cec-Chr10:33283467 2.30E-06 dispersed
Cec10g1844 Cec-Chr10:33283467 Cec11g1438 Cec-Chr11:28553272 5.70E-11 dispersed
Cec04g0725 Cec-Chr4:26416301 Cec10g1844 Cec-Chr10:33283467 9.90E-115 transposed
Cec05g1187 Cec-Chr5:10861431 Cec10g1844 Cec-Chr10:33283467 2.30E-50 transposed
Cec05g1298 Cec-Chr5:12990005 Cec10g1844 Cec-Chr10:33283467 3.80E-48 transposed
Cec07g0613 Cec-Chr7:8245350 Cec10g1844 Cec-Chr10:33283467 6.10E-46 transposed
Cec10g1844 Cec-Chr10:33283467 Cec02g2358 Cec-Chr2:40813868 2.00E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1844 - - - 0.0