Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec10g1886 | ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCCTCCCTCTCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGATTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGATTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCGTGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG | 879 | 53.01 | MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPRAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33687955 | 33691074 | + | CePI673135_10g018860.1 | Cec10g1886 | 214801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec10g1886 | 292 | Gene3D | - | 29 | 158 | IPR015300 | - | |
| Cec10g1886 | 292 | ProSiteProfiles | B3 DNA-binding domain profile. | 39 | 150 | IPR003340 | GO:0003677(InterPro) | |
| Cec10g1886 | 292 | Pfam | B3 DNA binding domain | 39 | 149 | IPR003340 | GO:0003677(InterPro) | |
| Cec10g1886 | 292 | SUPERFAMILY | DNA-binding pseudobarrel domain | 37 | 150 | IPR015300 | - | |
| Cec10g1886 | 292 | MobiDBLite | consensus disorder prediction | 196 | 217 | - | - | |
| Cec10g1886 | 292 | CDD | B3_DNA | 37 | 139 | IPR003340 | GO:0003677(InterPro) | |
| Cec10g1886 | 292 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 28 | 232 | IPR044800 | GO:0003700(InterPro) | |
| Cec10g1886 | 292 | MobiDBLite | consensus disorder prediction | 239 | 256 | - | - | |
| Cec10g1886 | 292 | MobiDBLite | consensus disorder prediction | 236 | 256 | - | - | |
| Cec10g1886 | 292 | MobiDBLite | consensus disorder prediction | 184 | 217 | - | - | |
| Cec10g1886 | 292 | SMART | B3_2 | 39 | 150 | IPR003340 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec07g0888 | Cec-Chr7:21955307 | Cec10g1886 | Cec-Chr10:33687955 | 1.00E-38 | dispersed | |
| Cec10g1886 | Cec-Chr10:33687955 | Cec01g0127 | Cec-Chr1:1163092 | 1.00E-38 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30437 | PF02362 | B3 | 8.80E-31 | CL0405 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec10g1886 | K09287 | - | csv:101214938 | 470.7 |