Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1892 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATTGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCACACTGGAGCAGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCTATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTACGGGCATCAGTTAAAGACTAA 495 44.24 MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33753759 33757480 + CePI673135_10g018920.1 Cec10g1892 214807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1892 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Cec10g1892 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Cec10g1892 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cec10g1892 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Cec10g1892 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 Gene3D - 3 164 IPR029000 -
Cec10g1892 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cec10g1892 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1892 K12733 - - csv:101222111 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1326 Cec-Chr1:25868946 Cec10g1892 Cec-Chr10:33753759 7.90E-44 dispersed
Cec05g0245 Cec-Chr5:1997566 Cec10g1892 Cec-Chr10:33753759 1.30E-41 dispersed
Cec05g1984 Cec-Chr5:31860299 Cec10g1892 Cec-Chr10:33753759 1.30E-37 dispersed
Cec09g1868 Cec-Chr9:35315362 Cec10g1892 Cec-Chr10:33753759 2.90E-30 dispersed
Cec10g1892 Cec-Chr10:33753759 Cec02g0613 Cec-Chr2:6089652 8.20E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g950 . . . . Bpe04g01516 . Bma04g01568 . Cmo06g00493 . . . . . . . Cpe08g00998 . . . . . . . . . . . . . . Cone3ag0170 . . . . . . Cme04g02374 . Blo09g00488 Bda03g01656 . . . . . Sed02g0502 . . Cma06g00492 Cma14g00328 Car06g00431 Car14g00298 Cpe03g00282 . Bhi11g02339 Tan08g1697 Cmetu05g0569 Lac10g2836 Hepe05g0401 . . Cla10g01783 Cam10g1838 Cec10g1892 Cco10g1866 Clacu10g1853 Cmu10g2603 Cre10g1992 Lsi03g01872 Csa03g03444 Chy04g01907 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35