Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1941 ATGGACTTTGATCTGAAGCAATGTAGAACACAGAGGGAGTCAGAGGAGCAACATTCTGCAAAGATTTCTAAGTTGTTTGTTGAACAGACCCATCATCTTTCTTCTTCTTCCACTTCTGTTCTTCCTTTGTTTGTACCTGCTGATTCCAACAACAACTCCAAAACTTCCAACATCTTGTCAGCATTTCAAGATTCAACTACTTCTACATTACCCAGGATGCTGGGTTATTTCAGTGTGGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCTGCCGTCCCGCCGGAGCTTCTCCACCCTATTAAGAAAAGCCTTATCTCTTCCTCTTCTACTAATCCTTTCTTTCTTCATCATCCTCTTCAACATTTACCTCACTATCCCACTTCTTTGTTGAAAGCAGGGTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCAAGAGATGTCGTCGCCGGCCAGAAATACTGTGAGCGCCATATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTACCACAACTAACCCCTCCACCACCGCCGCCGCTGCTGGCGGCGGTTGCTCTCTCAGTTCCAACTCCAACCGTGTTATTGGTGGCGGTGGTGGTCGGCCTTTTTTGACTGTTGAAAGTGGAAATTATTTCTCTACGTGTGGACAAACCCCATCCGTTGATCTTCTCCATGTCAATCAAGGTTCTTGTTCTAATTCCTTATCAGAGAACAAGAAGTTCTATGAATCCCACAAAGAGCCTTCCGCCGGAGATGCTAAATCCGACGGCCACATTTTAAGACATTTTTTCGACGATTGGCCGCGGTCCGAGAATGGTGGTTGTGGGAATGACAACAACAGCGTCAACCAACGAATGAACTCCACGTCTGCTTCGGCAACATCCCTTTCGATTTCGATGCCTGGGAACCCTTCGTCATCGTCTTCTGACGTGTCGTTGAAATTGTCGACAGGAGGAAGTTCTGATCAAGGCAGTGACCACCATATCCACCAAAATGGCAACGTTGACCGAGAACACGTGCAGTTGAATTGGGCTGCAGGATGGGCCGCCACGCAGATGGCGTCAATGGGCGGACCGCTGGCTGAAGCGCTGCGCTCCGCCAACAACAACTCGTTGCCAACGAGTGTGCTGCATCAGTTGCAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1257 49.32 MDFDLKQCRTQRESEEQHSAKISKLFVEQTHHLSSSSTSVLPLFVPADSNNNSKTSNILSAFQDSTTSTLPRMLGYFSVAQRQELELQALIFRYMLAGAAVPPELLHPIKKSLISSSSTNPFFLHHPLQHLPHYPTSLLKAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETTTTNPSTTAAAAGGGCSLSSNSNRVIGGGGGRPFLTVESGNYFSTCGQTPSVDLLHVNQGSCSNSLSENKKFYESHKEPSAGDAKSDGHILRHFFDDWPRSENGGCGNDNNSVNQRMNSTSASATSLSISMPGNPSSSSSDVSLKLSTGGSSDQGSDHHIHQNGNVDREHVQLNWAAGWAATQMASMGGPLAEALRSANNNSLPTSVLHQLQRTTNSEASFIST 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34206819 34208764 - CePI673135_10g019410.1 Cec10g1941 214856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1941 418 SMART QLQ_2 75 111 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g1941 418 MobiDBLite consensus disorder prediction 298 353 - -
Cec10g1941 418 MobiDBLite consensus disorder prediction 293 356 - -
Cec10g1941 418 MobiDBLite consensus disorder prediction 191 209 - -
Cec10g1941 418 ProSiteProfiles WRC domain profile. 150 194 IPR014977 -
Cec10g1941 418 ProSiteProfiles QLQ domain profile. 76 111 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec10g1941 418 MobiDBLite consensus disorder prediction 182 209 - -
Cec10g1941 418 Pfam WRC 151 193 IPR014977 -
Cec10g1941 418 PANTHER GROWTH-REGULATING FACTOR 5 48 332 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cec10g1941 418 Pfam QLQ 77 109 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1941 Cec-Chr10:34206819 Cec11g0158 Cec-Chr11:1805634 6.50E-26 dispersed
Cec10g1941 Cec-Chr10:34206819 Cec03g1578 Cec-Chr3:33894248 9.70E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30441 PF08879 WRC 2.70E-22 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1941 - - - 0.0