Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1945 ATGGCTTCTTCCTCCGGCCGCCACCCCGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCGTCCCCGCGTCTAGTTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCAGCCATGGAAGCACGAAATAATAATGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGATGGAGACGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 549 52.82 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASSSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHDGDDDGDNGADQNLWNFP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34263210 34263758 - CePI673135_10g019450.1 Cec10g1945 214860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1945 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 Pfam AP2 domain 9 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 MobiDBLite consensus disorder prediction 162 182 - -
Cec10g1945 182 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677(InterPro)
Cec10g1945 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 181 IPR045277 GO:0003700(InterPro)
Cec10g1945 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g1945 182 FunFam Ethylene-responsive transcription factor 2 9 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1131 Cec-Chr4:30910810 Cec10g1945 Cec-Chr10:34263210 2.90E-37 dispersed
Cec10g0379 Cec-Chr10:4559771 Cec10g1945 Cec-Chr10:34263210 2.10E-36 dispersed
Cec10g1945 Cec-Chr10:34263210 Cec11g1573 Cec-Chr11:30021244 2.80E-26 dispersed
Cec10g1944 Cec-Chr10:34254389 Cec10g1945 Cec-Chr10:34263210 1.10E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30443 PF00847 AP2 8.70E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1945 - - - 0.0