Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1968 ATGGAATGGGCTACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCACCCGAATCTTCCTTTGGGTTTCTCTATAACTATAATCTTGAACAATATCAGAGCGTAGATGTGAAGCATTCGGCGATGGCAGGGGCGTCGGAGACAGTGCTGCAAGGGCTAGTTCCAGGGATGGATATGAACAGCTATGGCAATTTGGAGAAGAAGAAGCGGCTGAGTAGCGAGCAGCTCGAGTCGCTTGAACGAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGAAAGCAGAAGCTGTCGAAGGAACTCGGTCTGCAGCCTCGCCAGATTGCCGTTTGGTTTCAGAACCGTCGTGCGAGGTGGAAGGCAAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAGGAGTTTGATGCCATTTCTAGAGAGAAACACAAGCTTCAAGAAGAGGTAATGAAGCTCAAGAGCATGCTGAGAGAACTTCAAGCTGCAAGGAATCAAGTGTCGACGGTGTACACTGACTTGTCGGGGGAGGAGACAGTGGAAAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAACCGAGACCAGTGGCTGCAGCAGCAGCAGTGGCGGCAGCAAACCACTACCCGACGCCGCCGGAGCAGTGCAACTATGTGTTCAACACTGAGGATTACAACCCCATGTCTCCAACTTTCTGGGGATCTCTGCCATCCTCTTATCATCCCCAGTAG 723 52.14 MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQSVDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKPRPVAAAAAVAAANHYPTPPEQCNYVFNTEDYNPMSPTFWGSLPSSYHPQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34472096 34475034 + CePI673135_10g019680.1 Cec10g1968 214883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1968 240 Coils Coil 113 164 - -
Cec10g1968 240 SUPERFAMILY Homeodomain-like 55 123 IPR009057 -
Cec10g1968 240 SMART HOX_1 63 125 IPR001356 GO:0003677(InterPro)
Cec10g1968 240 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec10g1968 240 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677(InterPro)
Cec10g1968 240 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677(InterPro)
Cec10g1968 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 178 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec10g1968 240 CDD homeodomain 66 122 IPR001356 GO:0003677(InterPro)
Cec10g1968 240 FunFam Putative homeobox-leucine zipper protein ATHB-51 63 126 - -
Cec10g1968 240 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g1968 240 Gene3D - 65 125 - -
Cec10g1968 240 Coils Coil 61 81 - -
Cec10g1968 240 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cec10g1968 240 Pfam Homeodomain 66 119 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0983 Cec-Chr7:24158517 Cec10g1968 Cec-Chr10:34472096 4.00E-19 dispersed
Cec09g0378 Cec-Chr9:3241315 Cec10g1968 Cec-Chr10:34472096 6.60E-13 dispersed
Cec10g1777 Cec-Chr10:32503119 Cec10g1968 Cec-Chr10:34472096 1.40E-13 dispersed
Cec10g1968 Cec-Chr10:34472096 Cec11g1483 Cec-Chr11:29044288 1.70E-15 dispersed
Cec04g1629 Cec-Chr4:35616947 Cec10g1968 Cec-Chr10:34472096 9.70E-21 transposed
Cec10g1968 Cec-Chr10:34472096 Cec04g1119 Cec-Chr4:30730177 4.50E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30448 PF00046 Homeodomain 1.90E-17 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1968 - - - 0.0