Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g1973 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCGTTTATGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCTCTTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCACTTCGTTGTGATTCTCATTCACAGAAACTCTACTTCGATGCACTAAATGGAAGTTCATATCCTATCCTCAAAATCAACGCTTCAAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTGCTGGCTCTTGTATTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTTTTCTCTTGAACTGTTCTCCTCGCCTGCTGGTTTCGCCGCTCAATTGCACTCCTTCGAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGAAAAAAAAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGGATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTCCTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCATCAGATTGTCTTCCTGCGGGTGGTTCAAACAGTCGTTCTCGTTGCCTTTGTAGAAGGAGCTACTACTGGAATCATATTCTTGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTAGACTGAGCATAAAGCTGTCGGTGTGTCTCGTTTCCTTTTTCATTCTAGCTGCGGTCATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAGGATATGTTGAATTTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAACGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTATAAAGGTGAACTTCAAGATGGGACTATCGTAGCCGTGAAGTCGGCCAAAGTGGGTAATCTAAAGAGCACCGAACAAATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCATAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCGTTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTTCTTTCTTGGATTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAAATTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAATTAACGGATAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTACTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAAATTGTGTCAATCTAGCGATCTATGTGATCCAACAAGTGCAAAATGGTGCATTCATTGACGCCATCGATAAACAGCTTATCAGTGACGATCCATCCAGCAATATACTAATCAGTGTGAAGCACTTCTTGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAATAGTTGCTGAAGAAGGTAAGTCTTAA 1917 41.58 MVTMKIPTPCLFGSYLFFLLFFSRLCYSQKTCPSCGLFEVPYPLSTNPNCGDLDYALRCDSHSQKLYFDALNGSSYPILKINASSQRLVIQPSPWVAGSCITQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKKAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEIQWAPPPEPICRTQSDCTGASDCLPAGGSNSRSRCLCRRSYYWNHILGTCLRTNRKSMVRLSIKLSVCLVSFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTIVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPSFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDKFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDENCVNLAIYVIQQVQNGAFIDAIDKQLISDDPSSNILISVKHFLELALACLREKKVERPFMKDVLQELEYITQILDNPEIVAEEGKS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34510559 34512475 + CePI673135_10g019730.1 Cec10g1973 214888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g1973 638 CDD STKc_IRAK 352 620 - -
Cec10g1973 638 FunFam Wall-associated receptor kinase-like 20 422 631 - -
Cec10g1973 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
Cec10g1973 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1973 638 SMART serkin_6 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1973 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 623 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cec10g1973 638 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Cec10g1973 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Cec10g1973 638 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Cec10g1973 638 Gene3D Transferase(Phosphotransferase) domain 1 422 633 - -
Cec10g1973 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g1973 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g1973 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1973 Cec-Chr10:34510559 Cec11g1957 Cec-Chr11:33629984 4.50E-79 dispersed
Cec02g1603 Cec-Chr2:33581588 Cec10g1973 Cec-Chr10:34510559 2.10E-33 transposed
Cec04g0932 Cec-Chr4:28978495 Cec10g1973 Cec-Chr10:34510559 1.20E-153 transposed
Cec06g1331 Cec-Chr6:26684396 Cec10g1973 Cec-Chr10:34510559 1.50E-08 transposed
Cec11g0690 Cec-Chr11:7627726 Cec10g1973 Cec-Chr10:34510559 1.30E-163 transposed
Cec10g1973 Cec-Chr10:34510559 Cec11g1779 Cec-Chr11:31966794 1.70E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72344 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g1973 - - - 0.0