Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2002 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTGCCGGCCTAATCAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGCGCCTTGGTCGGCGGTAACATCACTATCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGAATAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCGTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGGTTCACCCACGAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.61 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPAGLISASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGIIVAANILVGGPFTGASMNPAVAFGPAVVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34803829 34805873 + CePI673135_10g020020.1 Cec10g2002 214917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2002 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cec10g2002 253 FunFam Probable aquaporin TIP1-1 6 253 - -
Cec10g2002 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cec10g2002 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cec10g2002 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2002 253 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1559 Cec-Chr1:30162758 Cec10g2002 Cec-Chr10:34803829 4.90E-73 dispersed
Cec09g0187 Cec-Chr9:1663622 Cec10g2002 Cec-Chr10:34803829 2.30E-71 dispersed
Cec09g2117 Cec-Chr9:38161239 Cec10g2002 Cec-Chr10:34803829 2.20E-85 dispersed
Cec10g2002 Cec-Chr10:34803829 Cec10g2040 Cec-Chr10:35154497 2.10E-27 dispersed
Cec10g2002 Cec-Chr10:34803829 Cec04g1088 Cec-Chr4:30392241 4.40E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2002 K09873 - csv:101222386 449.129