Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2018 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAGTACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTCGGGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCAATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTGATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTGCGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCAATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGCGCCAAGATTAATCTCTCCTCTTCTAAGCCTCCAAATAGGGGAGAGTTGGCCAAGATGGGCACTAAATACTTCTTCTCAAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCTTGAAGGTTCCAGATCTAAGTGGTAGTGTACCTATATTAATTCACACCCCTTAA 1809 45.05 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQVQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFGELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSNLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESALSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPNSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKINLSSSKPPNRGELAKMGTKYFFSRDLLQITSMAIEIVSISLKVPDLSGSVPILIHTP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34944164 34949483 + CePI673135_10g020180.1 Cec10g2018 214933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2018 602 Gene3D - 443 546 IPR045851 -
Cec10g2018 602 Gene3D - 13 442 IPR042099 -
Cec10g2018 602 Pfam AMP-binding enzyme 39 405 IPR000873 -
Cec10g2018 602 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - GO:0016405(PANTHER)
Cec10g2018 602 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Cec10g2018 602 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cec10g2018 602 CDD 4CL 25 536 - -
Cec10g2018 602 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Cec10g2018 602 SUPERFAMILY Acetyl-CoA synthetase-like 17 544 - -
Cec10g2018 602 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0278 Cec-Chr3:3082337 Cec10g2018 Cec-Chr10:34944164 2.30E-193 dispersed
Cec05g2359 Cec-Chr5:34845651 Cec10g2018 Cec-Chr10:34944164 3.10E-108 dispersed
Cec07g0263 Cec-Chr7:2578381 Cec10g2018 Cec-Chr10:34944164 7.60E-106 dispersed
Cec10g2018 Cec-Chr10:34944164 Cec11g1410 Cec-Chr11:28310849 1.10E-103 dispersed
Cec10g2018 Cec-Chr10:34944164 Cec11g1308 Cec-Chr11:27128232 1.20E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2018 K01904 - csv:101204417 988.408