Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec10g2019 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATAACCAACAACCCATCAGCTCCAACAGCGAAAAACACAGACCCTGAAGATCTCAGACCCACAGGAGAGGCTCAGGACGGAACTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACCTCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCAGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATATACACCACCACAATAGCCAAGCTCTCCGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGTGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTCAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTCTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTCGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTCCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCAGAGGAGAAGATTGTCAGACTATTTTCGACCAACCTCAAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCGAAGGCAATACGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATACCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGTTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCTGCCACTTTGGCAAATGCCCATAAGTTCATATCAGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTCGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCACTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTTATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGGGAGGATGAGGAGAGAGAGAGCTAG | 4080 | 46.72 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAPTAKNTDPEDLRPTGEAQDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGCDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLQVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLKIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 34968895 | 34974880 | + | CePI673135_10g020190.1 | Cec10g2019 | 214934 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec10g2019 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Cec10g2019 | 1359 | Gene3D | - | 1083 | 1338 | IPR027417 | - | |
| Cec10g2019 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Cec10g2019 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | FunFam | ABC transporter B family member 1 | 748 | 1057 | - | - | |
| Cec10g2019 | 1359 | FunFam | ABC transporter B family member 1 | 1082 | 1332 | - | - | |
| Cec10g2019 | 1359 | MobiDBLite | consensus disorder prediction | 22 | 91 | - | - | |
| Cec10g2019 | 1359 | FunFam | ABC transporter B family member 1 | 427 | 677 | - | - | |
| Cec10g2019 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cec10g2019 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Cec10g2019 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Cec10g2019 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cec10g2019 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
| Cec10g2019 | 1359 | FunFam | ABC transporter B family member 19 | 1058 | 1080 | - | - | |
| Cec10g2019 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Cec10g2019 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY | 68 | 701 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cec10g2019 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Cec10g2019 | 1359 | FunFam | ABC transporter B family member 1 | 100 | 435 | - | - | |
| Cec10g2019 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Cec10g2019 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 160 | 1065 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cec10g2019 | 1359 | Gene3D | - | 435 | 700 | IPR027417 | - | |
| Cec10g2019 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 386 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cec10g2019 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cec10g2019 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cec10g2019 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | GO:0016887(InterPro) | |
| Cec10g2019 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g0828 | Cec-Chr2:9898347 | Cec10g2019 | Cec-Chr10:34968895 | 1.40E-125 | dispersed | |
| Cec09g1971 | Cec-Chr9:36785314 | Cec10g2019 | Cec-Chr10:34968895 | 1.10E-297 | dispersed | |
| Cec10g1095 | Cec-Chr10:24314612 | Cec10g2019 | Cec-Chr10:34968895 | 1.20E-50 | dispersed | |
| Cec10g2019 | Cec-Chr10:34968895 | Cec10g1814 | Cec-Chr10:32937352 | 8.30E-14 | dispersed | |
| Cec01g1711 | Cec-Chr1:31756665 | Cec10g2019 | Cec-Chr10:34968895 | 2.80E-89 | transposed | |
| Cec02g0036 | Cec-Chr2:397084 | Cec10g2019 | Cec-Chr10:34968895 | 1.60E-17 | transposed | |
| Cec02g1982 | Cec-Chr2:37673171 | Cec10g2019 | Cec-Chr10:34968895 | 2.20E-09 | transposed | |
| Cec02g1988 | Cec-Chr2:37725329 | Cec10g2019 | Cec-Chr10:34968895 | 3.80E-56 | transposed | |
| Cec04g2122 | Cec-Chr4:39127805 | Cec10g2019 | Cec-Chr10:34968895 | 9.60E-291 | transposed | |
| Cec05g1729 | Cec-Chr5:28821032 | Cec10g2019 | Cec-Chr10:34968895 | 0.00E+00 | transposed | |
| Cec09g1166 | Cec-Chr9:11706055 | Cec10g2019 | Cec-Chr10:34968895 | 0.00E+00 | transposed | |
| Cec09g1942 | Cec-Chr9:36373206 | Cec10g2019 | Cec-Chr10:34968895 | 0.00E+00 | transposed | |
| Cec09g2120 | Cec-Chr9:38170422 | Cec10g2019 | Cec-Chr10:34968895 | 2.70E-278 | transposed | |
| Cec10g1905 | Cec-Chr10:33868381 | Cec10g2019 | Cec-Chr10:34968895 | 2.10E-54 | transposed | |
| Cec11g1124 | Cec-Chr11:22710057 | Cec10g2019 | Cec-Chr10:34968895 | 1.40E-281 | transposed | |
| Cec11g1376 | Cec-Chr11:28035401 | Cec10g2019 | Cec-Chr10:34968895 | 1.10E-294 | transposed | |
| Cec01g1592 | Cec-Chr1:30604401 | Cec10g2019 | Cec-Chr10:34968895 | 7.20E-13 | wgd | |
| Cec10g2019 | Cec-Chr10:34968895 | Cec02g2257 | Cec-Chr2:39947091 | 1.10E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec10g2019 | K05658 | - | csv:101220974 | 2456.4 |