Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2040 ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGAGCGGCGTCGAGGAAGGACTATTTGGACCCGCTTCCGGCGCCGATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACGGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGTAATGTCTGCGGCGGAGTTGGCCCCGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCCACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTGATTGGAGCAACCATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCGCCAACTCGCTATTAA 873 53.95 MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHWIFWVGPLIGATIAAMYYQYVLRASAVKAIGSFRSSPPTRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35154497 35157760 + CePI673135_10g020400.1 Cec10g2040 214955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2040 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Cec10g2040 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cec10g2040 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Cec10g2040 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec10g2040 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cec10g2040 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1041 Cec-Chr4:29965779 Cec10g2040 Cec-Chr10:35154497 1.00E-112 dispersed
Cec10g2002 Cec-Chr10:34803829 Cec10g2040 Cec-Chr10:35154497 2.10E-27 dispersed
Cec02g1182 Cec-Chr2:27816193 Cec10g2040 Cec-Chr10:35154497 2.90E-16 transposed
Cec10g2040 Cec-Chr10:35154497 Cec02g2224 Cec-Chr2:39638513 1.40E-120 wgd
Cec10g2040 Cec-Chr10:35154497 Cec04g1036 Cec-Chr4:29927490 1.30E-76 wgd
Cec10g2040 Cec-Chr10:35154497 Cec05g2318 Cec-Chr5:34482005 9.50E-117 wgd
Cec10g2040 Cec-Chr10:35154497 Cec08g0780 Cec-Chr8:19589521 4.30E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2040 K09872 - csv:101214142 551.977