Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2045 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGATGATGCTAACCCTAACCCTAACCCTAACCCTAAACCCAAACCCTCTGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGACGTGCGTACACCATGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATGATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCGGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCGTCCGCAGTAGCACTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAACAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCGTCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAACAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAGTTGTCTCAGCCAACTTCTAATACCACCCAACGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCGAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1491 44.33 MSSNPFSLLSSTTTAAFAHQHDDANPNPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHDHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAVALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSSCLSQLLIPPNGNNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFAANH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35188726 35191019 - CePI673135_10g020450.1 Cec10g2045 214960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2045 496 MobiDBLite consensus disorder prediction 1 53 - -
Cec10g2045 496 MobiDBLite consensus disorder prediction 1 26 - -
Cec10g2045 496 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Cec10g2045 496 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 146 170 - -
Cec10g2045 496 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Cec10g2045 496 Gene3D Classic Zinc Finger 49 121 - -
Cec10g2045 496 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Cec10g2045 496 FunFam protein indeterminate-domain 12-like 49 118 - -
Cec10g2045 496 Gene3D Classic Zinc Finger 122 204 - -
Cec10g2045 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cec10g2045 496 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 173 212 - -
Cec10g2045 496 SMART c2h2final6 112 142 IPR013087 -
Cec10g2045 496 SMART c2h2final6 70 92 IPR013087 -
Cec10g2045 496 SMART c2h2final6 147 167 IPR013087 -
Cec10g2045 496 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 108 142 - -
Cec10g2045 496 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cec10g2045 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 465 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1494 Cec-Chr7:30546187 Cec10g2045 Cec-Chr10:35188726 7.50E-88 dispersed
Cec09g0068 Cec-Chr9:572197 Cec10g2045 Cec-Chr10:35188726 2.20E-87 dispersed
Cec10g2045 Cec-Chr10:35188726 Cec11g0084 Cec-Chr11:1068620 3.30E-85 dispersed
Cec03g0227 Cec-Chr3:2458314 Cec10g2045 Cec-Chr10:35188726 2.90E-78 transposed
Cec01g1580 Cec-Chr1:30412475 Cec10g2045 Cec-Chr10:35188726 1.10E-57 wgd
Cec10g2045 Cec-Chr10:35188726 Cec04g1030 Cec-Chr4:29882504 3.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30455 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2045 K25870 - csv:101213422 764.992