Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2065 CGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCCGATACTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACTGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAACCCCAGCATCTGATGGTCCCTATGCAAGGTCTTGAAGATCTTGAAAAAGACTTGGTAGCAGTAGCAACCTTTGGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTATCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 840 46.31 RLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWPILRRVPAEEVMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQPQHLMVPMQGLEDLEKDLVAVATFGSGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFIPHKLSYFFIVLLEFRESSVCSAKEG 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35366968 35377496 - CePI673135_10g020650.1 Cec10g2065 214980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2065 279 Gene3D Histone, subunit A 66 190 IPR009072 GO:0046982(InterPro)
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cec10g2065 279 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 123 IPR003958 -
Cec10g2065 279 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2065 279 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 68 187 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec10g2065 279 SUPERFAMILY Histone-fold 68 154 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2065 K08065 - - csv:101212699 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0423 Cec-Chr10:5109684 Cec10g2065 Cec-Chr10:35366968 9.40E-35 dispersed
Cec10g0441 Cec-Chr10:5277628 Cec10g2065 Cec-Chr10:35366968 7.20E-26 dispersed
Cec10g2065 Cec-Chr10:35366968 Cec02g1461 Cec-Chr2:32002614 2.70E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0441 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.6 2.0e-48 189.5
Cec02g0951 . 6 131 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.3 1.9e-38 156.4
Cec10g0423 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.0e-37 151.4
Cec10g0441 . 8 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cec07g1022 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cec02g0951 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cec10g0423 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.4 3.9e-51 198.0
Cec07g1022 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Cec02g1461 . 406 524 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Cec09g0592 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cec02g1461 . 393 509 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cec02g0951 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cec10g0423 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.1e-42 166.8
Cec07g1022 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cec09g0592 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cec09g0592 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cec02g0951 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cec07g1022 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cec02g1461 . 399 537 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.8 6.8e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.3 7.3e-48 187.2
Cec02g0951 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cec07g1022 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.6e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Cec07g1022 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cec02g0951 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cec02g1461 . 419 513 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cec09g0592 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cec02g0951 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Cec10g0423 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.0e-50 194.5
Cec07g1022 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.3e-45 177.2
Cec02g1461 . 419 529 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Cec09g0592 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cec02g1461 . 404 526 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.4 7.0e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT3G53340 60.9 1.2e-45 179.9
Cec02g0951 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cec07g1022 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30457 PF00808 CBFD_NFYB_HMF 1.10E-21 CL0012 Cec TF