Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2067 ATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGAAGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCACCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCCGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGCGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCCAGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGGCCTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCGCCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCCTACCGATCTGTCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGATTTCGTTGCAGATCAAAGCAGAGGTACATTCCTTTCTCTCTTTTGCGAATGCTAAATCTGCTTTGTTCCTTTTCGGAGGCAGACAAGAGATTTAAAGCTTTCGTCAGTGAATTGCGTGACAAAAATGTGTTGATTGATCGAAGCACTGAAGATGGCGATCGGATTGAGAATTGA 1743 48.14 MLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNAEEAFPFTFVKDSAVQESLTAKSLCVFDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVRDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHPSETSVPLFSAAASSGFPSSSSSSTVISSASPAVGEIHFPAIFYWPVPTPLKAHLRPPCRPPPSPPPAPYRSVFSLSNEVPIVLSETKKLKMNRFRCRSKQRYIPFSLLRMLNLLCSFSEADKRFKAFVSELRDKNVLIDRSTEDGDRIEN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35404544 35413041 - CePI673135_10g020670.1 Cec10g2067 214982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2067 580 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 MobiDBLite consensus disorder prediction 37 62 - -
Cec10g2067 580 MobiDBLite consensus disorder prediction 134 161 - -
Cec10g2067 580 SMART rav1_2 252 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 SMART rav1_2 160 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677(InterPro)
Cec10g2067 580 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
Cec10g2067 580 CDD AP2 159 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 344 - -
Cec10g2067 580 CDD AP2 251 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 Pfam AP2 domain 160 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 Pfam AP2 domain 251 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec10g2067 580 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1293 Cec-Chr2:29578200 Cec10g2067 Cec-Chr10:35404544 3.10E-88 dispersed
Cec04g1386 Cec-Chr4:33487867 Cec10g2067 Cec-Chr10:35404544 4.00E-91 dispersed
Cec10g2067 Cec-Chr10:35404544 Cec11g0922 Cec-Chr11:14235145 3.20E-39 dispersed
Cec10g2067 Cec-Chr10:35404544 Cec02g2188 Cec-Chr2:39317021 2.30E-106 wgd
Cec10g2067 Cec-Chr10:35404544 Cec02g1459 Cec-Chr2:31986375 3.50E-70 wgd
Cec10g2067 Cec-Chr10:35404544 Cec04g1020 Cec-Chr4:29793912 1.10E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30458 PF00847 AP2 1.70E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2067 K09284 - csv:101211242 836.639