Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2072 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCACAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGACGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCTGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1188 42.68 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSTGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35445360 35448191 + CePI673135_10g020720.1 Cec10g2072 214987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2072 395 FunFam Serine/threonine-protein kinase PBS1 43 147 - -
Cec10g2072 395 MobiDBLite consensus disorder prediction 356 372 - -
Cec10g2072 395 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2072 395 MobiDBLite consensus disorder prediction 356 395 - -
Cec10g2072 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g2072 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cec10g2072 395 MobiDBLite consensus disorder prediction 31 50 - -
Cec10g2072 395 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g2072 395 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Cec10g2072 395 PANTHER OS07G0668900 PROTEIN 25 360 - -
Cec10g2072 395 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Cec10g2072 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Cec10g2072 395 MobiDBLite consensus disorder prediction 373 395 - -
Cec10g2072 395 CDD STKc_IRAK 77 345 - -
Cec10g2072 395 MobiDBLite consensus disorder prediction 15 50 - -
Cec10g2072 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2072 395 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0211 Cec-Chr3:2232119 Cec10g2072 Cec-Chr10:35445360 2.10E-144 dispersed
Cec05g0694 Cec-Chr5:5685097 Cec10g2072 Cec-Chr10:35445360 1.20E-149 dispersed
Cec06g0192 Cec-Chr6:1975766 Cec10g2072 Cec-Chr10:35445360 9.20E-146 dispersed
Cec09g0893 Cec-Chr9:8442863 Cec10g2072 Cec-Chr10:35445360 3.70E-131 dispersed
Cec10g0529 Cec-Chr10:6364338 Cec10g2072 Cec-Chr10:35445360 1.70E-131 dispersed
Cec10g1162 Cec-Chr10:25380428 Cec10g2072 Cec-Chr10:35445360 3.30E-86 dispersed
Cec10g2072 Cec-Chr10:35445360 Cec11g1916 Cec-Chr11:33394559 2.30E-121 dispersed
Cec10g2066 Cec-Chr10:35385036 Cec10g2072 Cec-Chr10:35445360 5.00E-61 proximal
Cec01g1540 Cec-Chr1:29980627 Cec10g2072 Cec-Chr10:35445360 2.20E-87 wgd
Cec10g2072 Cec-Chr10:35445360 Cec02g2184 Cec-Chr2:39255015 1.30E-132 wgd
Cec10g2072 Cec-Chr10:35445360 Cec02g1451 Cec-Chr2:31853469 1.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72347 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2072 - - - 0.0