Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2079 ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCTCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAGGCTCCTCCCTTACCACCCTTCCACCGCCACCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACCGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGGTGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAAAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGTTCCACGATGCGTCCATCTGATGGAGATTAA 855 58.83 MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSRLLPYHPSTATISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMRPSDGD 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35495384 35496238 - CePI673135_10g020790.1 Cec10g2079 214994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2079 284 SUPERFAMILY RING/U-box 204 258 - -
Cec10g2079 284 Pfam Ring finger domain 210 252 IPR001841 -
Cec10g2079 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
Cec10g2079 284 SMART ring_2 211 251 IPR001841 -
Cec10g2079 284 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Cec10g2079 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 183 257 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cec10g2079 284 CDD RING-H2_PA-TM-RING 210 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g2079 Cec-Chr10:35495384 Cec10g2133 Cec-Chr10:35904355 2.80E-12 dispersed
Cec01g1573 Cec-Chr1:30316205 Cec10g2079 Cec-Chr10:35495384 1.50E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2079 - - - 0.0