Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2124 ATGACCCCAGATAAAGAACTTAGAAAGTCGGGACATTGCATAGATAATTGTTCTTTTGGGGTTCAAGCACAAGAGAGCGCTCATGGGAGGCCTAAATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATGGCCTTCTCCCCGATCCATCACCAACTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGATGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCGGAATGGTTACAGTAATACTTCTTATTGTGGTGATGATAACCCTTTTCAAACCGTGAGTGAAGATATACTTCAAATCAGAAGCACTTTAGGTGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCGAGTTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAGGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGCGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAGTCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCTGAGAATGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGATGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCGGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTCGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACTGTCGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCATTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGGTGGATACTGCAAGGATGGAAAGGACCAAGGGTTAACTGTGGTGCTACTGTTTCAAATTTAAAACCTTGTCTTGAGGAAAGCTCCAATGCCCCATGTAATTTATTAGACCGAATCGATGAAACTTCTTCCATCCCCAGATAG 2340 41.67 MTPDKELRKSGHCIDNCSFGVQAQESAHGRPKFQNTIFSHNFQEFDGLLPDPSPTNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYRNGYSNTSYCGDDNPFQTVSEDILQIRSTLGDTISPSSNSSSNSIISGADGWVEFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLHFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGPRVNCGATVSNLKPCLEESSNAPCNLLDRIDETSSIPR 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35838549 35841106 + CePI673135_10g021240.1 Cec10g2124 215039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2124 779 MobiDBLite consensus disorder prediction 53 68 - -
Cec10g2124 779 ProSiteProfiles GRAS family profile. 371 751 IPR005202 -
Cec10g2124 779 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 351 741 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec10g2124 779 MobiDBLite consensus disorder prediction 49 68 - -
Cec10g2124 779 MobiDBLite consensus disorder prediction 283 308 - -
Cec10g2124 779 Pfam GRAS domain family 380 742 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2124 K27753 - - csv:101205887 1352.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0972 Cec-Chr2:13949601 Cec10g2124 Cec-Chr10:35838549 3.10E-57 transposed
Cec04g1245 Cec-Chr4:32034364 Cec10g2124 Cec-Chr10:35838549 7.40E-16 transposed
Cec04g1642 Cec-Chr4:35705724 Cec10g2124 Cec-Chr10:35838549 4.90E-42 transposed
Cec07g1011 Cec-Chr7:24661846 Cec10g2124 Cec-Chr10:35838549 6.50E-43 transposed
Cec07g1187 Cec-Chr7:27259268 Cec10g2124 Cec-Chr10:35838549 6.00E-38 transposed
Cec08g0576 Cec-Chr8:17091061 Cec10g2124 Cec-Chr10:35838549 7.50E-26 transposed
Cec10g0366 Cec-Chr10:4390631 Cec10g2124 Cec-Chr10:35838549 1.60E-34 transposed
Cec10g0383 Cec-Chr10:4619877 Cec10g2124 Cec-Chr10:35838549 6.10E-39 transposed
Cec10g2124 Cec-Chr10:35838549 Cec02g2110 Cec-Chr2:38678140 1.60E-155 wgd
Cec10g2124 Cec-Chr10:35838549 Cec03g0134 Cec-Chr3:1305707 7.10E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g2124 . 74 744 GRAS Transcription Factor Family AT2G37650 54.4 2.8e-194 675.6
Cec03g0134 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.9e-127 452.2
Cec04g1435 . 50 468 GRAS Transcription Factor Family AT3G49950 60.0 3.8e-135 478.4
Cec07g1187 . 21 445 GRAS Transcription Factor Family AT5G41920 64.9 3.8e-148 521.5
Cec04g0727 . 450 842 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Cec07g1011 . 1 608 GRAS Transcription Factor Family AT5G66770 56.9 1.9e-172 602.8
Cec04g1642 . 1 569 GRAS Transcription Factor Family AT5G66770 54.4 2.6e-150 529.3
Cec10g0453 . 45 544 GRAS Transcription Factor Family AT1G50600 58.3 1.8e-161 566.2
Cec02g0972 . 57 529 GRAS Transcription Factor Family AT1G50600 57.9 9.1e-150 527.3
Cec04g1847 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 8.2e-143 504.2
Cec10g0383 . 1 636 GRAS Transcription Factor Family AT1G63100 50.2 8.9e-163 570.9
Cec01g0636 . 44 580 GRAS Transcription Factor Family AT1G14920 67.3 1.7e-204 709.1
Cec03g0851 . 47 598 GRAS Transcription Factor Family AT1G14920 61.1 2.6e-184 642.1
Cec05g1316 . 31 554 GRAS Transcription Factor Family AT1G14920 56.1 2.9e-156 548.9
Cec10g0366 . 34 400 GRAS Transcription Factor Family AT1G55580 51.2 7.0e-103 371.3
Cec03g0851 . 47 595 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-177 618.2
Cec01g0636 . 1 578 GRAS Transcription Factor Family AT1G66350 56.5 2.2e-172 602.4
Cec05g1316 . 1 553 GRAS Transcription Factor Family AT1G66350 55.7 9.4e-160 560.5
Cec02g2110 . 252 772 GRAS Transcription Factor Family AT1G07520 50.5 1.0e-140 497.3
Cec02g0972 . 19 529 GRAS Transcription Factor Family AT5G48150 63.1 4.7e-177 617.8
Cec10g0453 . 17 544 GRAS Transcription Factor Family AT5G48150 58.9 1.6e-172 602.8
Cec04g1847 . 16 548 GRAS Transcription Factor Family AT5G48150 51.8 4.5e-151 531.6
Cec01g0636 . 46 577 GRAS Transcription Factor Family AT2G01570 68.1 2.3e-210 728.8
Cec03g0851 . 48 596 GRAS Transcription Factor Family AT2G01570 62.2 5.5e-188 654.4
Cec05g1316 . 30 554 GRAS Transcription Factor Family AT2G01570 57.8 4.4e-161 565.1
Cec03g0851 . 47 595 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-177 618.2
Cec01g0636 . 1 578 GRAS Transcription Factor Family AT1G66350 56.5 2.2e-172 602.4
Cec05g1316 . 1 553 GRAS Transcription Factor Family AT1G66350 55.7 9.4e-160 560.5
Cec03g0851 . 48 596 GRAS Transcription Factor Family AT3G03450 62.6 1.3e-178 623.2
Cec01g0636 . 10 577 GRAS Transcription Factor Family AT3G03450 58.1 7.4e-171 597.4
Cec05g1316 . 30 554 GRAS Transcription Factor Family AT3G03450 58.1 1.1e-158 557.0
Cec03g0851 . 47 598 GRAS Transcription Factor Family AT5G17490 56.3 1.4e-158 556.6
Cec01g0636 . 42 580 GRAS Transcription Factor Family AT5G17490 57.1 6.4e-156 547.7
Cec05g1316 . 27 554 GRAS Transcription Factor Family AT5G17490 52.7 1.0e-137 487.3
Cec09g0966 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 1.7e-173 606.3
Cec10g0453 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.1e-114 411.0
Cec03g0134 . 322 696 GRAS Transcription Factor Family AT5G59450 57.0 6.0e-129 458.4
Cec10g2124 . 369 741 GRAS Transcription Factor Family AT5G59450 54.3 4.9e-115 412.1
Cec04g1847 . 1 548 GRAS Transcription Factor Family AT4G17230 58.5 8.7e-177 617.1
Cec02g0972 . 1 529 GRAS Transcription Factor Family AT4G17230 50.2 8.8e-137 484.2
Cec10g0453 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 5.4e-134 474.9
Cec02g0972 . 134 529 GRAS Transcription Factor Family AT2G04890 64.5 7.4e-147 517.3
Cec10g0453 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 5.5e-142 501.1
Cec04g1847 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.7e-125 445.7
Cec03g1344 . 1 471 GRAS Transcription Factor Family AT1G50420 66.5 1.0e-176 616.7
Cec05g2301 . 26 487 GRAS Transcription Factor Family AT1G50420 60.9 2.0e-156 549.3
Cec06g0313 . 379 744 GRAS Transcription Factor Family AT4G00150 60.2 5.0e-122 435.3
Cec10g0274 . 497 860 GRAS Transcription Factor Family AT4G00150 55.4 1.0e-103 374.4
Cec07g1011 . 1 608 GRAS Transcription Factor Family AT3G50650 52.0 6.0e-149 524.6
Cec04g0727 . 240 840 GRAS Transcription Factor Family AT3G54220 64.1 3.6e-204 708.4
Cec07g1187 . 75 443 GRAS Transcription Factor Family AT3G54220 63.7 2.3e-134 476.5
Cec04g1447 . 93 493 GRAS Transcription Factor Family AT4G37650 66.8 1.8e-158 556.2
Cec02g1327 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 1.9e-123 439.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30464 PF03514 GRAS 2.70E-111 CL0063 Cec TF